PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G173000.2.p
Common NameGLYMA_09G173000, LOC100819219
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 1271aa    MW: 135174 Da    PI: 8.2096
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G173000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.21.1e-05474492119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+ +CH GpC pC+
  Glyma.09G173000.2.p 474 CGRHRCEHICHVGPCNPCK 492
                          ******************8 PP
2zf-NF-X116.12.5e-05538555118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+++CH+G C++C
  Glyma.09G173000.2.p 538 CGNHVCSEICHPGSCGEC 555
                          ****************** PP
3zf-NF-X122.13.2e-07596613118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H+C++ CH G+CppC
  Glyma.09G173000.2.p 596 CGMHSCKEACHVGECPPC 613
                          ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.09E-6296367No hitNo description
PROSITE profilePS500168.814303366IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590306363IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.509306364IPR001841Zinc finger, RING-type
CDDcd060083.26E-6397457No hitNo description
SMARTSM004380.05419437IPR000967Zinc finger, NF-X1-type
PfamPF014224.2421436IPR000967Zinc finger, NF-X1-type
CDDcd060083.97E-11464512No hitNo description
PfamPF014222.8E-4474492IPR000967Zinc finger, NF-X1-type
SMARTSM004385.7E-4474493IPR000967Zinc finger, NF-X1-type
CDDcd060087.50E-8528573No hitNo description
PfamPF014220.0026538555IPR000967Zinc finger, NF-X1-type
SMARTSM004381.6E-4538557IPR000967Zinc finger, NF-X1-type
CDDcd060085.02E-13586634No hitNo description
PfamPF014221.8E-5596613IPR000967Zinc finger, NF-X1-type
SMARTSM004383.5E-5596615IPR000967Zinc finger, NF-X1-type
PfamPF0142221654665IPR000967Zinc finger, NF-X1-type
CDDcd060083.65E-8684727No hitNo description
PfamPF014220.25694711IPR000967Zinc finger, NF-X1-type
SMARTSM004380.083694713IPR000967Zinc finger, NF-X1-type
CDDcd060084.36E-6741789No hitNo description
PfamPF014227.1751768IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043751769IPR000967Zinc finger, NF-X1-type
CDDcd060081.05E-4794852No hitNo description
PfamPF014220.83804819IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9804834IPR000967Zinc finger, NF-X1-type
CDDcd060081.09E-5832881No hitNo description
PfamPF014220.16836862IPR000967Zinc finger, NF-X1-type
SMARTSM004380.028843864IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.0E-510801137IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1271 aa     Download sequence    Send to blast
MSSQLRRERR DWSRVPPQGA TRQEWVPRGA AAASSNVAQP SNLHSNNNAD AGSSNQGVAV  60
AAPSSVSRAR SNNHGNDSGS SNQGVAVAVV SVSHGRSNNH GTDAAGSSNQ GVAIAALSVS  120
RGRSNIHGND AGSSNQGVAV AALPASRGRS NNHGTDAAGS SNQGVAIAAL SVSCGRSNIH  180
GHDAGSSNQG VAVAAPPASR GRSNNPRNDA GSSNQGLAVA PPVNRGRSNN QGKDSGPSSQ  240
GVAVAALASR GRSNNHGTHR MEKEKDKGNK SGSQVEKGLG VGVRYSSLPQ LVQEIQEKLM  300
KGTVECMICY EMVQRSAAVW SCSSCYSIFH LNCIKKWARA PISSDLSLSV EKNHELNWRC  360
PGCQSVKFTS SKEIRYVCFC GKRIDPPSDL YLTPHSCGEP CGKPLQKVLV AGGNRDDLCP  420
HACVLQCHPG PCPPCKAFAP PRLCPCGKKN ITTRCSDRQS VLTCGQCCDK LLECGRHRCE  480
HICHVGPCNP CKVPISATCF CSKKTEVFSC GDMSVKGEIE AKGGVFACGS YCLKKLGCGN  540
HVCSEICHPG SCGECEFLPS RVKTCCCGKT RLENERQSCL DPIPTCSKVC GKLLHCGMHS  600
CKEACHVGEC PPCLVEVSQK CRCGSTSRTV ECYKTTMENE KFLCEKSCGI KKNCGRHRCS  660
ERCCPFTNSN HYNTFSGDWA PHFCSMPCGK KLRCGQHSCE CLCHSGHCPP CFQTIFNELA  720
CACGRTSIPP PLPCGTPPPS CQLPCSVPQP CGHSVSHSCH FGDCPPCSVP VAKECIGGHV  780
VLRNIPCGSK DIRCNHPCGK TRQCGLHACG RTCHPPPCDS QSGVVQGFKA PCGQTCGAPR  840
RSCRHTCMAP CHPSSPCPDI RCEFPVTITC SCGRVTANVP CDGGGSSSNY NADAIHEASI  900
IQTLPAPLQP VDANGKKVPL GQRKLICDDE CAKLERKRVL ADAFDITAPN LDSLHFSDNS  960
LSSELLSDFF RREPKWVLAV EERCKILVLG KSRGIGTAHG LKVHIFCPML KEKRDAVRLI  1020
ADRWKLAVNA AGWEPKRFIV ISVTPKSKAP ARVIGVKGTT TLNVPLPPAF DPLVDMDPRL  1080
VVSFPDLPRD TEINSLVLRF GGECELVWLN DKNALAVFHD PARAATAMRR LDYATVYQGA  1140
VLVAPNAGAS AASSATNAWG GALPALKGNS WKKAVAQDSG WGDSGVGEEW TAGSVNIQPS  1200
VWKKEAPLAA SLNRWNVLEQ ESSSSSSSTT IRADISGKKT ENTGEEGGSK EEENLDATSE  1260
VVDDWEKAYE *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G173000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533318.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_014617705.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_028181803.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_028181804.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A445J2630.0A0A445J263_GLYSO; NF-X1-type zinc finger protein NFXL1 isoform A
TrEMBLK7LEG70.0K7LEG7_SOYBN; Uncharacterized protein
STRINGGLYMA09G30343.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1