PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G170400.1.p | ||||||||
Common Name | gbp, GLYMA_09G170400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 283aa MW: 31234.9 Da PI: 10.2911 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 360.3 | 4e-110 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..........maflqrdkalaernkalverd 78 md d+ + rn+gyyepa+s+k++lglqlmss++e+ r++ + l+++++a+++rd m++ +rd+++++ + Glyma.09G170400.1.p 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LAGTNGAFHHRDiggmpqatypMEY-MRDAWISQ--------R 80 888888888*************************988766355555.9************************.9*******........7 PP GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168 +k++++++++++ ++ +++t+s++++q++ + + + +e++p+eea+ +ke+ ++kkrq++k+pk++kakk+k Glyma.09G170400.1.p 81 DKYMNMIPTNHN--------YGGIPETSSAHQIQMI-----QAPELP------KEEKPVEEAPVIEKENGTRKKRQSSKVPKSPKAKKPK 151 89******9997........999************3.....333223......3458999999999************************ PP GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258 + ++++k++++++ +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagr Glyma.09G170400.1.p 152 RGPRAPKDESAPAV--QRARIPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGR 239 *9999988888887..79************************************************************************ PP GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 KmS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir Glyma.09G170400.1.p 240 KMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 282 ******************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.7E-115 | 1 | 282 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.1E-168 | 1 | 282 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLAGT NGAFHHRDIG 60 GMPQATYPME YMRDAWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIQA PELPKEEKPV 120 EEAPVIEKEN GTRKKRQSSK VPKSPKAKKP KRGPRAPKDE SAPAVQRARI PKKTTEIVIN 180 GIDMDISSIP IPVCSCTGAP QQCYKWGSGG WQSACCTTGM SVYPLPMSTK RRGARIAGRK 240 MSIGAFKKVL EKLAAEGYNF SNPIDLRTYW AKHGTNKFVT IR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.60859 | 0.0 | hypocotyl| leaf| root| seed coat| somatic embryo| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 20530715 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G170400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF502431 | 0.0 | AF502431.1 Glycine max GAGA-binding protein (gbp) mRNA, complete cds. | |||
GenBank | BT093384 | 0.0 | BT093384.1 Soybean clone JCVI-FLGm-17A2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236213.1 | 0.0 | GAGA-binding protein | ||||
Refseq | XP_006586719.1 | 0.0 | GAGA-binding protein isoform X1 | ||||
Refseq | XP_006586720.1 | 0.0 | GAGA-binding protein isoform X1 | ||||
Refseq | XP_006586721.1 | 0.0 | GAGA-binding protein isoform X1 | ||||
Refseq | XP_028181775.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_028181776.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_028181777.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_028181778.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Swissprot | Q9SKD0 | 2e-94 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | A0A0B2SA82 | 0.0 | A0A0B2SA82_GLYSO; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | Q8LKV1 | 0.0 | Q8LKV1_SOYBN; GAGA-binding protein | ||||
STRING | GLYMA09G30050.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 | Representative plant | OGRP1865 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-88 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G170400.1.p |
Entrez Gene | 606296 |
Publications ? help Back to Top | |||
---|---|---|---|
|