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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.09G170300.1.p |
| Common Name | GLYMA_09G170300, LOC100800718 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31229 Da PI: 10.3059 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G170300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 354.5 | 2.2e-108 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..........maflqrdkalaernkalverd 78
md d+ + rn+gyyepa+s+k++lglqlmss++e+ r++ + l+++++a+++rd m++ +rd+++++ +
Glyma.09G170300.1.p 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LAGTNGAFHHRDiggmpqatypMEY-MRDAWISQ--------R 80
888888888*************************988766355555.9************************.9*******........7 PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
+k++++++++++ ++ +++t+s++++q++ + + + +e++p+eea+ ++k + ++kkrq +k+pk+++akk+k
Glyma.09G170300.1.p 81 DKYMNMIPTNHN--------YGGIPETSSAHQIQMI-----QAPELP------KEEKPVEEAPVVEKANGTRKKRQGPKVPKSPRAKKPK 151
89******9997........999************3.....333333......3457899999999999999****************** PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
++++k++++++ +r++ +kk++++v+ng+++D+s++PvPvCsCtG+ +qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagr
Glyma.09G170300.1.p 152 MGPRAPKDENAPSV--QRARVPKKTTEIVINGIDMDISSIPVPVCSCTGVHQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGR 239
*9988877777666..79************************************************************************ PP
GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
KmS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir
Glyma.09G170300.1.p 240 KMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 282
******************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLAGT NGAFHHRDIG 60
GMPQATYPME YMRDAWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIQA PELPKEEKPV 120
EEAPVVEKAN GTRKKRQGPK VPKSPRAKKP KMGPRAPKDE NAPSVQRARV PKKTTEIVIN 180
GIDMDISSIP VPVCSCTGVH QQCYKWGSGG WQSACCTTGM SVYPLPMSTK RRGARIAGRK 240
MSIGAFKKVL EKLAAEGYNF SNPIDLRTYW AKHGTNKFVT IR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
