PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G143700.3.p
Common NameGLYMA_09G143700, LOC100820113
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 744aa    MW: 81424.5 Da    PI: 5.3468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G143700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.96.2e-2256111156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++k +++t++q++eLe++F+++++p++++r++L+k+lgL+ +qVk+WFqNrR+++k
  Glyma.09G143700.3.p  56 KKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMK 111
                          79999************************************************999 PP
2START174.66.1e-552684902205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la+ a++el+k+a+ +  +W kss    e +n de+ + f++  +     + +ea r +gvv++ +   ve+l+d+  +W e++     +
  Glyma.09G143700.3.p 268 LALNAMNELIKMAQPDTSLWIKSSdgrnEVLNHDEYARLFSPYVGskpagYVTEATRGTGVVPASSLGIVETLMDVD-RWAEMFSsmiaS 356
                          6789********************9999999*********99666999*****************************.9****999999* PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a+tlev+ssg      galq+m ae q+lsplvp R   f+Ry++q+g+g+w++vdvSvd  +++++s++++ +++lpSg++i++++ng 
  Glyma.09G143700.3.p 357 AATLEVLSSGmgesrsGALQVMLAEVQLLSPLVPaRSLSFLRYSKQHGEGVWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNGF 446
                          ****************************************************************************************** PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          sk+twveh  ++++++h+l+r+lv+sg+ +ga++w atl rqc 
  Glyma.09G143700.3.p 447 SKITWVEHSQYDESVVHQLYRPLVSSGIGFGAQRWIATLLRQCD 490
                          *****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-2136113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2341107IPR009057Homeodomain-like
PROSITE profilePS5007117.96153113IPR001356Homeobox domain
SMARTSM003892.5E-1955117IPR001356Homeobox domain
PfamPF000461.8E-1956111IPR001356Homeobox domain
CDDcd000864.18E-1860113No hitNo description
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PROSITE profilePS5084844.133258494IPR002913START domain
SuperFamilySSF559611.1E-33260491No hitNo description
CDDcd088757.61E-110262489No hitNo description
SMARTSM002343.3E-38267491IPR002913START domain
PfamPF018522.3E-46268490IPR002913START domain
SuperFamilySSF559612.61E-17510712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MEGHSEMGQI GESFDTSNLL GRLRDDEYES RSGSDNFDGG SGDDQDAGDD QPHKKKKKYH  60
RHTPQQIQEL EAFFKECPHP DEKQRTDLSK RLGLENKQVK FWFQNRRTQM KTQLERHENM  120
ILRQENDKLR AENSVMKDAL ANPTCNNCGG PAIPGQISLE EHQTRMENAR LKDELNRICA  180
LANKFLGRPL SPLASPMALP PSNSGLELAI GRNGIGGPSN FGMSLPMGFD VGDGVMGSSP  240
GMSSMGARSP MGMMGNEIQL ERSMLLDLAL NAMNELIKMA QPDTSLWIKS SDGRNEVLNH  300
DEYARLFSPY VGSKPAGYVT EATRGTGVVP ASSLGIVETL MDVDRWAEMF SSMIASAATL  360
EVLSSGMGES RSGALQVMLA EVQLLSPLVP ARSLSFLRYS KQHGEGVWAV VDVSVDIGRN  420
VTNSHPLMSC RRLPSGCVIQ DMPNGFSKIT WVEHSQYDES VVHQLYRPLV SSGIGFGAQR  480
WIATLLRQCD CLAILMSQIP SEDPTVISLE GKKNMLKLAQ RMTEYFCSGI CASSVRKWEI  540
LNIGNLADDM RIMARKINMD DPTEAPGIVL SASTSVWMPV SRQRVFDFLR DENLRGEWDM  600
LSKDGPMKEM LHIAKGQDRG NCVSILHSAN SECNVLYLQE SWTDASGSLV VYSPINMQAL  660
NMVMNCGDSS FVALRPSGFA ILPDGASNNG DGSDGGGSCL LTVGLQMLPN GDQSTKFTME  720
SVVTVNSLIS NTIQKVKDAL GVA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G143700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587344.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_028180201.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLK7LDX20.0K7LDX2_SOYBN; Uncharacterized protein
STRINGGLYMA09G26600.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]