PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G137000.2.p

Common Name

GLYMA_09G137000, LOC100780901

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 721aa MW: 79090.9 Da PI: 6.8891

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G137000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.8e-29	305	356	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Glyma.09G137000.2.p 305 AEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 356 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	293	376	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-25	309	356	IPR003035	RWP-RK domain
PROSITE profile	PS51745	24.955	620	702	IPR000270	PB1 domain
SMART	SM00666	9.4E-29	620	702	IPR000270	PB1 domain
SuperFamily	SSF54277	6.21E-24	620	705	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.0E-28	620	701	No hit	No description
CDD	cd06407	4.52E-37	621	701	No hit	No description
Pfam	PF00564	2.3E-20	621	701	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MQAVKLRSSE ILEHQYIQIC NEDRQYALAE ILEILTVVCE THSLPLAQTW VPCKHRSVLA 60 HGGGHKKSCS SFDGCCMGQV CMSITEVAFY VIDAHTWGFH EACVEHHLQQ GQGVAGRAFL 120 SHNMCFCGNI AQFCKTEYPL VHYALMFGLT SCFAVCLQSS HTGNDDYVLE FFLPPGITDF 180 NEQKRLLGSI LATMKPHFQS LKIASGIELE ENASIEIIEA RNERVNLRFE SIPITQSSKS 240 PPRHASPNVG EGLPLEPSEQ KIMAYFDGIN DGGSLGDNAG GHIDQNTSLK IKTKKKPSER 300 KRGKAEKSIS LDVLQHYFTG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKIKKVNRSL 360 SKLKCVIESV HGAERAFGLN SLSTVSLPIA AGSFSEPSTS NKFNRQTSLT IRPSEPKINE 420 KDFDASGASE TKRQAAMEDQ FLGLEARAQS PEKVINDRGV ATQEIGTKGT NKFRTGSGSS 480 ESSGNPTPHG SCHGSPPNEI SPPKDIFVTG HSEKCLVLRG SLGSTTLHST STPNCTTAYP 540 MPHIVETTEP QELFGGQLLE RAGSSKDLRN LCPSADAVLE DQVPEAYKMN PQCSDLPQMQ 600 HMDNLNNTLT PFAVRKEVKS VTIKATYKED IIRFKVSMDC GIVELKEEIA KRLKLEAGTF 660 DIKYLDDDHE WVLIACDADL QECMDISRSS GSNVIRLVVH DILPILGSSC ESSGDWKGCI 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MQAVKLRSSE ILEHQYIQIC NEDRQYALAE ILEILTVVCE THSLPLAQTW VPCKHRSVLA  60
HGGGHKKSCS SFDGCCMGQV CMSITEVAFY VIDAHTWGFH EACVEHHLQQ GQGVAGRAFL  120
SHNMCFCGNI AQFCKTEYPL VHYALMFGLT SCFAVCLQSS HTGNDDYVLE FFLPPGITDF  180
NEQKRLLGSI LATMKPHFQS LKIASGIELE ENASIEIIEA RNERVNLRFE SIPITQSSKS  240
PPRHASPNVG EGLPLEPSEQ KIMAYFDGIN DGGSLGDNAG GHIDQNTSLK IKTKKKPSER  300
KRGKAEKSIS LDVLQHYFTG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKIKKVNRSL  360
SKLKCVIESV HGAERAFGLN SLSTVSLPIA AGSFSEPSTS NKFNRQTSLT IRPSEPKINE  420
KDFDASGASE TKRQAAMEDQ FLGLEARAQS PEKVINDRGV ATQEIGTKGT NKFRTGSGSS  480
ESSGNPTPHG SCHGSPPNEI SPPKDIFVTG HSEKCLVLRG SLGSTTLHST STPNCTTAYP  540
MPHIVETTEP QELFGGQLLE RAGSSKDLRN LCPSADAVLE DQVPEAYKMN PQCSDLPQMQ  600
HMDNLNNTLT PFAVRKEVKS VTIKATYKED IIRFKVSMDC GIVELKEEIA KRLKLEAGTF  660
DIKYLDDDHE WVLIACDADL QECMDISRSS GSNVIRLVVH DILPILGSSC ESSGDWKGCI  720
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22386	0.0	root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G137000.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533182.2	0.0	protein NLP6
Refseq	XP_028181204.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0B2S9T7	0.0	A0A0B2S9T7_GLYSO; Protein NLP7
TrEMBL	K7LDR9	0.0	K7LDR9_SOYBN; Uncharacterized protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Glyma.09G137000.2.p
Entrez Gene	100780901

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]