PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G131400.1.p | ||||||||
Common Name | GLYMA_09G131400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 354aa MW: 39296.9 Da PI: 9.9681 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.4e-12 | 109 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a++++ + Wk+I + +g ++ q++s+ qky Glyma.09G131400.1.p 109 RENWTEPEHDKFLEAIQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 153 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.02E-15 | 103 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.911 | 104 | 158 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-17 | 107 | 156 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.2E-10 | 108 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-6 | 108 | 149 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-10 | 109 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-7 | 111 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAKVVMTNEE LFNLVLHVEC RTSAPNICSY INLPYVSPQI PHLTLSLKSL KMVSKNPNPP 60 EGFYLDPSGG MALPGKPPFA SVSAAAAAAN SSEDAAKKIR KPYTITKSRE NWTEPEHDKF 120 LEAIQLFDRD WKKIEAFVGS KSVIQIRSHA QKYFLKVQKS GTSEHLPPPR PKRKAAHPYP 180 QKASKNAPVL SQVSGRFQSS SALLEPGYIS KNDAPPMLKT PIMNTVSSSW SNNTLQTVNL 240 SPVKKVNNPC SSGESTPKVR PVGESNGQGN KIHPLRVLPD FTEVYGFIGS LFDPNATEHL 300 QKLKKMDRID VETVLLLMRN LSINLTSPDF EHHRKLLSSY EVEPERDNNY QRG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35320 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G131400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093234 | 0.0 | BT093234.1 Soybean clone JCVI-FLGm-17C23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235967.1 | 0.0 | MYB transcription factor MYB136 | ||||
Swissprot | Q8H0W3 | 1e-117 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0R0IDQ2 | 0.0 | A0A0R0IDQ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G24400.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 | Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 2e-99 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G131400.1.p |
Publications ? help Back to Top | |||
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