PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G123300.1.p | ||||||||
Common Name | GLYMA_09G123300, LOC102663292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 354aa MW: 39219.5 Da PI: 5.6202 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 184.3 | 8.5e-57 | 175 | 351 | 1 | 178 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+e L +cA+av+ +d+e +++l+++l++++s +g+p+qRl ay++eAL arla+s+s+++k l+++e + sse l+ ++l++e++P+ Glyma.09G123300.1.p 175 LKEMLCTCAKAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIFKVLKCKEPT---SSELLSHMHLLYEICPY 261 5789*****************************************************************9...999************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 lkf+++ aN aI e +++e++vHii f+i+qG+QW++L+qa a Rp+ pp++RiT +++++s + le +g rL+++A++ +vpfe Glyma.09G123300.1.p 262 LKFGYMSANGAIAEVMKEESEVHIIHFQINQGIQWVSLIQAVAGRPGAPPKIRITSFDDSTSAyaMEGGLEIVGARLSRLAQSYNVPFES 351 ***********************************************************998899999********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.093 | 149 | 353 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-54 | 175 | 351 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MQMSQKHKMS YDSSRFSIEP VQNLGSCCFL QSGNLDYSSS SDNGSHATYP SVCIFEQYCT 60 LESSTNNNIP SLNSPSTVSF SPNNSPVSKL HSKAYVLSSQ NLLEIVNESL ENKSFLTLND 120 DELRHKIREL ESAMLGHDTD ILDTYDTIIP KESDSFLKEA ERWKRMVAKI SRGDLKEMLC 180 TCAKAVAGND METTEWLMSE LRKMVSVSGN PIQRLGAYML EALVARLASS GSTIFKVLKC 240 KEPTSSELLS HMHLLYEICP YLKFGYMSAN GAIAEVMKEE SEVHIIHFQI NQGIQWVSLI 300 QAVAGRPGAP PKIRITSFDD STSAYAMEGG LEIVGARLSR LAQSYNVPFE SNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-26 | 182 | 350 | 26 | 191 | Protein SCARECROW |
5b3h_A | 4e-26 | 182 | 350 | 25 | 190 | Protein SCARECROW |
5b3h_D | 4e-26 | 182 | 350 | 25 | 190 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24051 | 0.0 | cotyledon| leaf| root| seed coat| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G123300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006588180.1 | 0.0 | scarecrow-like protein 5 | ||||
Swissprot | Q9LDL7 | 1e-92 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A0R0I7H8 | 0.0 | A0A0R0I7H8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G22110.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35776 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 2e-91 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G123300.1.p |
Entrez Gene | 102663292 |
Publications ? help Back to Top | |||
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