PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G117500.1.p
Common NameGLYMA_09G117500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 622aa    MW: 70560 Da    PI: 6.5934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G117500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.5e-1316106199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+   s ++ ++   +p+kf++e+g +   s  + l+ ++g +W++    +k++g ++++kGWkeF+    L  +  v+Fk++++s  
  Glyma.09G117500.1.p  16 FFKII--SEASLQDGKLIPNKFTREYGVN--LSNPVFLKPPDGIEWKIFW--TKHDGDIWFQKGWKEFATYYSLSHKYLVLFKYQETSH- 98 
                          77777..6666667789*********877..6777*************99..*******************************976555. PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                           l v++f++
  Glyma.09G117500.1.p  99 -LEVHIFDQ 106
                          .59999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1713107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1714107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.40614107IPR003340B3 DNA binding domain
CDDcd100172.36E-1315105No hitNo description
PfamPF023628.2E-1116106IPR003340B3 DNA binding domain
SMARTSM010191.1E-616107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MTKLKKKHPL PSEILFFKII SEASLQDGKL IPNKFTREYG VNLSNPVFLK PPDGIEWKIF  60
WTKHDGDIWF QKGWKEFATY YSLSHKYLVL FKYQETSHLE VHIFDQSALE VDYPFCGIKI  120
EHENLDHVSN DSVEVSDDSI EVLDELTPSQ KKTRLKSTSC SRPLFEESSN LPQHVQIKGE  180
QSQGTNLGMS SDKQVLDGMA PEQPPAKRQK KDQSSSQSAH RTEYPTKFRT VTHEQRYETE  240
IKMRNFIPEK NFKLKPGEYD EIQKVITWRK WEKLCSFAQN FHPQIVREFY ANAYGIEGDT  300
TPLHTSWVRG KMVSYEEETI NSFFGTQAAA DCSYKAGGDL VKDYGEMKKL LARPGAIWIG  360
KKVKPRCLRS IDLYPVVHAW SSWMHHTVLP CANESNVTVV RSQFLIATIL NEPLDIGRII  420
SSDIHQVAQT NKPKATLSHP SLICFLCERA GVGIPWDEPT ATIPRPITAA WIDSRLDGPM  480
GAPPQPQEQQ PQPQPQQEQE QHAQEDQPPA PSSLDQCLML LVQTQTQLSQ DIHRLVTEAR  540
VQSRGTNALC RLLALQFRSQ QQQELLKPQG QLTEADILQM VGLEKPAKPS SWHPAKVPTA  600
DGAGEDLQDE DLIYPSSSQP I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G117500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0R0ID180.0A0A0R0ID18_SOYBN; Uncharacterized protein
STRINGGLYMA09G20281.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-18B3 family protein