PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G117200.2.p | ||||||||
Common Name | GLYMA_09G117200, LOC100818507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 400aa MW: 45227.5 Da PI: 6.8629 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.3 | 8.6e-16 | 71 | 151 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + lpkkf++++g + + l+ +g +W++ + +k++g+++++kGWkeF+ L+ g + F+++g+s f v++f++ Glyma.09G117200.2.p 71 ADGILLPKKFTRKYGDGMSN--PVFLKPADGTEWKIHY--TKHGGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHF--DVHIFDS 151 35589*********766444..5***************..**********************************9999..9999986 PP | |||||||
2 | B3 | 54.8 | 1.8e-17 | 275 | 362 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 ff ++++ + l +p +fae++ +k ++ ++le ++gr+W+v + + ++ lt+GW++F+++n+L++gD++vF+l+++ ++ Glyma.09G117200.2.p 275 FFRLVMKPSFINGYYLEIPPQFAERYLKK--THAIVILEILDGRTWSVIC--SATR----LTEGWQKFASENNLNVGDVCVFELIQKiQG 356 6677788888888999**********544..455899999**********..6666....*************************98677 PP E..EEE CS B3 90 felvvk 95 ++v+ Glyma.09G117200.2.p 357 LCFKVS 362 655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.39E-21 | 58 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.366 | 59 | 152 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-22 | 59 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.37E-17 | 60 | 150 | No hit | No description |
SMART | SM01019 | 4.3E-14 | 61 | 152 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 70 | 151 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-23 | 268 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-23 | 270 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.32E-22 | 274 | 364 | No hit | No description |
Pfam | PF02362 | 1.8E-15 | 275 | 361 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.831 | 275 | 367 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-13 | 275 | 367 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MLQINISSSQ EAIALFFFFF ISFSALLSQK SHFAFTLRSH LRIHNMTSAR NKHPLPPAVH 60 FVKIILTTSL ADGILLPKKF TRKYGDGMSN PVFLKPADGT EWKIHYTKHG GEIWFQKGWK 120 EFATYYSLDH GHLLFFEYEG TSHFDVHIFD SSALEIDYPS HGTHEGKDNL VEISDDSVEI 180 LGEQFSCQNT RGSSPQPCKK MKNSITTNVE RSPNVVNLHQ HVPTISNSSQ KATFMKQMLD 240 EDDGIGIFNT EYPKVEQSTS TALKKASTFR SEHPFFRLVM KPSFINGYYL EIPPQFAERY 300 LKKTHAIVIL EILDGRTWSV ICSATRLTEG WQKFASENNL NVGDVCVFEL IQKIQGLCFK 360 VSIYQGAEEP ICPISQACAD GLCQKAFSKR EAEVDDDTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-15 | 262 | 365 | 35 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 262 | 365 | 35 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G117200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014617263.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | K7LDC5 | 0.0 | K7LDC5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G20150.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G117200.2.p |
Entrez Gene | 100818507 |