PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G113100.1.p
Common NameGLYMA_09G113100, LOC100797195
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 272aa    MW: 30899.6 Da    PI: 5.59
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G113100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.4e-29129183155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++Wt++LHe+Fv av++LGG++kA Pk++l++m+ k Lt+ hvkSHLQkYR+
  Glyma.09G113100.1.p 129 KNRIKWTKDLHEQFVVAVNSLGGPQKAKPKAVLQMMNSKLLTIFHVKSHLQKYRT 183
                          68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-26127184IPR009057Homeodomain-like
SuperFamilySSF466898.24E-15127183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-20129183IPR006447Myb domain, plants
PfamPF002491.5E-7133182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MYHFSQVSNG EHSSVANVGG LETDSFNFQQ HVFDAQFSCL KFDSQNLLCQ SSGDNSAPIL  60
FGSVVDSFLS SDEDTFCDTY SEYSELPCHE VSLYEHFRHE NNILESNYSA PVNEVEVVCA  120
TSGMVPTRKN RIKWTKDLHE QFVVAVNSLG GPQKAKPKAV LQMMNSKLLT IFHVKSHLQK  180
YRTTMYMQNT TKEGYKESQG RDMVTELQQK IYMQLEESRL LQLEIERGIQ EQLKAQRNLQ  240
MLVEEQKEQV NSVTGQNQTK QTGGSKSLEE K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-19129186259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G113100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361410.0AC236141.2 Glycine max clone GM_WBb0004A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587218.10.0myb family transcription factor PHL5
RefseqXP_028248309.10.0myb family transcription factor PHL5-like
TrEMBLA0A445IZS20.0A0A445IZS2_GLYSO; Myb family transcription factor PHL5
TrEMBLK7LD840.0K7LD84_SOYBN; Uncharacterized protein
STRINGGLYMA09G17452.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1870146
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-35G2-like family protein