PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G113000.1.p | ||||||||
Common Name | GLYMA_09G113000, LOC102668541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 425aa MW: 47046.6 Da PI: 6.5141 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 9e-32 | 257 | 311 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Glyma.09G113000.1.p 257 KTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRI 311 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.617 | 254 | 314 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 255 | 312 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-17 | 255 | 311 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-23 | 257 | 312 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 261 | 310 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-21 | 341 | 387 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 425 aa Download sequence Send to blast |
MNENRIDSCV GRIQQSYGLN GDWNSEFGNC SSQYFDMRQA SNMGTSNQPL AMASGGGVEQ 60 EPNIGQTKSS SSIISRFESP ASAFYATEMC MGGFPQYDSQ IGNNLSLMSQ SSKFSNMEFP 120 LYQSPRQSLF MASLANQPPP NFDLSNPLQE ILKSHLNSDQ CVRSPEDSNK IPYGDFPGSN 180 FLPIEQHKFF IDDAISTGIS PSIPSKGNQD QSVSCGPFNL PSAQLSFSSQ QEMLSPTGSM 240 STTSGNSNSN GPVVSSKTRI RWTQELHEKF VECVNRLGGA EKATPKAILR LMDSDGLTIF 300 HVKSHLQKYR IAKFMPQPTQ GKSDKRTNVE NVHLDVKTGL QIKEALQLQL DVQRRLHEQL 360 EIQRKLQLRI EEQGKQLKMM FDQQQKTSNG HLITENNDRP ISSKDVLVST SDGSENSLFS 420 TNIS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-23 | 257 | 314 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-23 | 257 | 314 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-23 | 257 | 314 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-23 | 257 | 314 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-23 | 257 | 314 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G113000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC236141 | 0.0 | AC236141.2 Glycine max clone GM_WBb0004A16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006587215.1 | 0.0 | myb family transcription factor PHL5 isoform X1 | ||||
Refseq | XP_028180223.1 | 0.0 | myb family transcription factor PHL5-like isoform X1 | ||||
TrEMBL | A0A0B2PVD6 | 0.0 | A0A0B2PVD6_GLYSO; Myb family transcription factor APL | ||||
TrEMBL | K7LD83 | 0.0 | K7LD83_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G17404.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-69 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G113000.1.p |
Entrez Gene | 102668541 |