PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G098600.1.p | ||||||||
Common Name | GLYMA_09G098600, LOC100807822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 699aa MW: 76222.1 Da PI: 5.6535 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.4 | 1.6e-28 | 206 | 259 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Glyma.09G098600.1.p 206 KARVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 259 68*******************.********************************8 PP | |||||||
2 | Response_reg | 83.5 | 6.4e-28 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ +++l+++l+k +y +v+++ ++ eal++l+e++ +Dl++ D++mp++dG++ll+ e++lp+i+++ahg+ +++ + Glyma.09G098600.1.p 21 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVEALTMLRENRnkFDLVISDVNMPDIDGFKLLELVGL-EMDLPVIMLSAHGDTKLVMK 108 799********************.***************999889*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Glyma.09G098600.1.p 109 GVTHGACDYLLKPVRIEELKN 129 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.2E-164 | 1 | 698 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-42 | 18 | 152 | No hit | No description |
SuperFamily | SSF52172 | 5.69E-36 | 18 | 142 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.4E-33 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.843 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.2E-25 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.76E-28 | 22 | 134 | No hit | No description |
PROSITE profile | PS51294 | 12.025 | 203 | 262 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-30 | 203 | 263 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-19 | 204 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 206 | 259 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 208 | 258 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MAVENQREDG GCDRFPVGMR VLAVDDDPIC LKVLENLLRK CQYHVTTTNQ AVEALTMLRE 60 NRNKFDLVIS DVNMPDIDGF KLLELVGLEM DLPVIMLSAH GDTKLVMKGV THGACDYLLK 120 PVRIEELKNI WQHVVRRKNF DSRDQNKASN EEKAPNFAGG GSQGLRSENS ADQNKRLGKK 180 RKDQSDEEEE GGEENEDDED PSAQKKARVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM 240 NVEGLTRENV ASHLQKYRLY LKKAAQQANM VAALGGSDSY LRIGSIDGYG DFCTSSGSGR 300 ITNATLPSYA STGIFSRLNS PAALNMRGIS SSALIRPVQS QNINSSLNTL GNIQPSIFPA 360 NQSSSLLQGI PTSIELNQSK QRNCTTGISQ LSQVDSSGFT VASGFPDHRA TVNGPNNSLP 420 CVSNNHIMLQ GNPQTHGPGA FSNQSSVRAA SLCAESFDVG LCGSSNLLDH NRCNDNWQNA 480 AQLSKFPANS LPLCEAFSND QLPPTSINDS NSSTHIGNNS PVDFSSRMGI SVPLEDTRNE 540 LRCQEGLIGN IVQPSSYTPR QRWEEHKLDY NQNMSCPFNS VNSHASSSGV TSSMGHVLNQ 600 NNTICSNRVD ASSLVGQLNG ASPSISRCTE VEKFSSDIRL KPNEAYILEQ MKSQDGFMQN 660 TFGTLDDIMG VMVKREQNES TLLDGEMGFD AYPVGSCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-24 | 202 | 265 | 1 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 182 | KRLGKKRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39377 | 0.0 | epicotyl| root| seed coat| somatic embryo| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G098600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094204 | 0.0 | BT094204.1 Soybean clone JCVI-FLGm-18G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533888.2 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Refseq | XP_028180904.1 | 0.0 | two-component response regulator ARR12-like | ||||
Swissprot | Q6K8X6 | 1e-142 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A0B2P7U3 | 0.0 | A0A0B2P7U3_GLYSO; Two-component response regulator ARR12 | ||||
TrEMBL | I1L2E2 | 0.0 | I1L2E2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G14650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-131 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G098600.1.p |
Entrez Gene | 100807822 |
Publications ? help Back to Top | |||
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