PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G095700.1.p
Common NameGLYMA_09G095700, LOC100803034
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 370aa    MW: 41611.3 Da    PI: 5.5969
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G095700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073073392254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.09G095700.1.p 307 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 339
                          59*****************************87 PP
2ELK29.51.7e-10260281122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Glyma.09G095700.1.p 260 ELKHELKQGYKDKIVDIREEIL 281
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1894138IPR005540KNOX1
PfamPF037902.4E-1796137IPR005540KNOX1
SMARTSM012566.6E-27148203IPR005541KNOX2
PfamPF037912.5E-19152202IPR005541KNOX2
PROSITE profilePS512139.969260280IPR005539ELK domain
SMARTSM011885.1E-4260281IPR005539ELK domain
PfamPF037891.2E-5260281IPR005539ELK domain
PROSITE profilePS5007111.612280343IPR001356Homeobox domain
SMARTSM003891.2E-10282347IPR001356Homeobox domain
SuperFamilySSF466895.56E-16282346IPR009057Homeodomain-like
CDDcd000863.36E-11283344No hitNo description
Gene3DG3DSA:1.10.10.606.2E-25287344IPR009057Homeodomain-like
PfamPF059209.8E-18300339IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAFHEHLPHE ITFQPFAEEQ QQQQLGQSRD MQRLLPLSGG APTWLNNSNA ATLRQQNFLH  60
LQPESAATAA QQNDDVRAMD RNRTESNSEA DDLAEYKADI LGHPLYDQLL SAHVSCLRIA  120
TPVDQLPRID AQLQQSQRVV DKYSGLGNGN GVVDDKELDQ FMTHYVILLC AFKEQLQQHV  180
RVHAMEAVMA CWELEQSLQS LTGVSPGEGT GATMSDNEED QAESNANLYE GGMDGADSLS  240
FGPLVPTETE RSLMERVRQE LKHELKQGYK DKIVDIREEI LRKRRAGKLP GDTTSLLKAW  300
WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHTNPSSSSG SKSKRKSSGA  360
GESSNQSFM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.612300.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G095700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533879.20.0homeobox protein knotted-1-like LET12 isoform X1
RefseqXP_028180864.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLI1L2B30.0I1L2B3_SOYBN; Uncharacterized protein
STRINGGLYMA09G12820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-159KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]