PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G092900.1.p | ||||||||
Common Name | GLYMA_09G092900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 119aa MW: 13600 Da PI: 10.6012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4.2e-10 | 31 | 70 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +lv +++++G+g+W++++++ g+ R+ k+c++r +yl Glyma.09G092900.1.p 31 HIILVSYIQEHGPGNWRAVPAKTGLSRCIKSCRLRSTNYL 70 889********************************88886 PP | |||||||
2 | Myb_DNA-binding | 25.6 | 2.8e-08 | 77 | 108 | 2 | 35 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgR 35 g++T++E++ ++++ +lG++ W++Ia++++ R Glyma.09G092900.1.p 77 GNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QR 108 79*******************.*********.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.866 | 18 | 70 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.4 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-8 | 31 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-17 | 31 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-15 | 32 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00145 | 33 | 70 | No hit | No description |
PROSITE profile | PS51294 | 10.455 | 71 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9 | 75 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-7 | 77 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.92E-4 | 78 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 83 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MCIKQRLGLD TCIKTLSSKE GYRNKKESRQ HIILVSYIQE HGPGNWRAVP AKTGLSRCIK 60 SCRLRSTNYL RPGIKQGNFT EQEEKMIIHL QDLLGNRWAA IASYLPQRKL GFIILFLI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20427 | 1e-118 | leaf| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in 2-week-old seedlings, in the early stages of development. {ECO:0000269|PubMed:10571865}. | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in germinating seeds, rosette and cauline leaves, flower buds, open flowers, stems and developing siliques. {ECO:0000269|PubMed:25305760}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, hypocotyl and roots. {ECO:0000269|PubMed:24587042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G092900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}. | |||||
UniProt | INDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093784 | 1e-116 | BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA. | |||
GenBank | FJ768022 | 1e-116 | FJ768022.1 Glycine max transcription factor MYB392 mRNA, complete cds. | |||
GenBank | KT031204 | 1e-116 | KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006588087.1 | 1e-81 | transcription factor MYB94 | ||||
Swissprot | P81392 | 2e-43 | MYB06_ANTMA; Myb-related protein 306 | ||||
Swissprot | Q9SCU7 | 3e-43 | MYB30_ARATH; Transcription factor MYB30 | ||||
Swissprot | Q9SN78 | 3e-43 | MYB94_ARATH; Transcription factor MYB94 | ||||
TrEMBL | A0A0R0I605 | 6e-82 | A0A0R0I605_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G49360.1 | 8e-47 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74650.1 | 5e-46 | myb domain protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G092900.1.p |