PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G082000.1.p | ||||||||
Common Name | GLYMA_09G082000, LOC100776125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1033aa MW: 114110 Da PI: 7.0001 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.6e-41 | 147 | 223 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ Glyma.09G082000.1.p 147 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATQALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTL 223 6*************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-32 | 142 | 209 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.077 | 145 | 222 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-38 | 146 | 227 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-29 | 148 | 221 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 2.49E-7 | 803 | 919 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.5E-6 | 804 | 915 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.95E-8 | 804 | 914 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1033 aa Download sequence Send to blast |
MESQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTARQLNSV PSDCRSRELF 60 PTDPEILATG GASNSLSSAY DDANLGEGKR ELEKRRRGVN DDGGVEMNDG AGSLNLNLGG 120 QVYPIMEGEE KSGKKTKMTA STSSRAVCQV EDCRADLSNA KDYHRRHKVC DMHSKATQAL 180 VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTLPDATVVN GGSLNEEKGS 240 SYLLMSLLRI LSNMHSNGSD NMRNQDVLSH LLRNLASLAG TINGRNIVSL LEGSQGLVKA 300 GTSGAAQNVP NTNSDGPEPS RPFDSFIKMD DGLIHRDPPE SMVQRETTPA NDMAKKCIAS 360 GSDGVGSLKS PSVPQSSNVL LSRDGLPPQS VAAQTTVGRI GLSNIDLNNV YDDVQDYVEN 420 TRNSCPPLPS GNGSLDHPLW IQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV 480 FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCII LTIYLRLENS AWEELCYNLE 540 SSLRKLAAPN DSFWRTGWIY TRVQHSVAFL YNGQVVLDAP LRLKSPQNCQ ILCVKPLAVS 600 ASSSAQFVVK GFNFLLSNTR LLCALEGKYL VQDSCYDLID SADAVNGHQE LQHLSFSCHV 660 PNVTGRGFIE VEDNGLSSCS FPFIVAEQEI CLEICTLDNV IEAAEMADDN QIKTNLMEEK 720 TQALYFIQEM GWLLHRSRVK VRLGPMAPVQ DRFHFNRFIW LVGFSMDHDW CAVMKKLLNI 780 IFEGTVDTGD HASVELALLE MGLLHKAVKR NCRPMVEILL KFVPVKASDG GDSNEKQVNK 840 SPDRFIFRPD TVGPVGLTPL HVAASMHGSE NVLDALTDDP GMVGTEAWKS AQDATGLTPY 900 DYASMRGYYS YIQLVQSKTS NTCKSQHVLD IPGTLVDSNT KQKQSDRHRS SKVSSLQTEK 960 IETTAMPRRC GLCQQKLAYG GMRRALVYRP AMLSMVAIAA VCVCVALLFK SSPKVYYVFQ 1020 PFSWESLEYG SI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-30 | 139 | 221 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.10404 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G082000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534999.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | I1L206 | 0.0 | I1L206_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G09790.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 | Representative plant | OGRP2595 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G082000.1.p |
Entrez Gene | 100776125 |