PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G080000.1.p
Common NameGLYMA_09G080000, LOC100816719
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 459aa    MW: 50502.8 Da    PI: 7.7054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G080000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.3e-29201259259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrC++   Cpv+k+v+r+ +d++++++tYeg+Hnh+
  Glyma.09G080000.1.p 201 GDGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPVRKHVQRCFKDETILITTYEGNHNHP 259
                          69**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-31185261IPR003657WRKY domain
SuperFamilySSF1182901.83E-26193261IPR003657WRKY domain
PROSITE profilePS5081129.184195261IPR003657WRKY domain
SMARTSM007744.1E-33200260IPR003657WRKY domain
PfamPF031064.5E-25202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEDKIVINEL LQDEEKPSSD NTMGSTLLSL SLNNSGQSLN QMGMLRIKLE EAKKENEILK  60
AMLNQVNEHC TTLQNRILFE MQQHQLSASS SSPRNNNNHH DSQGNKQDAE KPMLHTRQFL  120
NIGESSILDG NTKACAIAEN VEKKILGKNL ASDINKYNVK GEINSQITLN EVKSTEDQAS  180
EVTCRRARVS IRARSDFSLM GDGCQWRKYG QKTAKGNPCP RAYYRCSMGT ACPVRKHVQR  240
CFKDETILIT TYEGNHNHPL PPAARPLASS TSAALNMFLS GSITSSHCTT TLSNSPLFSS  300
SPSTISPSTA VATFSHNATC PTVTLDLTQP NNYLQFQRAT TSSQDRHTPS FFPLPLHGNP  360
QNYSEDLMHL WYRVPLPTML APENKNLALV DVVSEAITKD PSLKAALFSA ISSLTEDPDQ  420
KNNINNQSQL SKSSGGYDPC SKVPAIIPPH QPCTTQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23187263176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.537520.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G080000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434641e-104BT143464.1 Lotus japonicus clone JCVI-FLLj-21J12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533819.10.0probable WRKY transcription factor 47
RefseqXP_028248432.10.0probable WRKY transcription factor 47
TrEMBLA0A0B2QC520.0A0A0B2QC52_GLYSO; Putative WRKY transcription factor 42
TrEMBLK7LCG40.0K7LCG4_SOYBN; Uncharacterized protein
STRINGGLYMA09G09400.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-50WRKY family protein