PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G076800.1.p | ||||||||
Common Name | GLYMA_09G076800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 172aa MW: 19254.6 Da PI: 7.7022 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.7 | 1.3e-12 | 7 | 31 | 9 | 33 |
GATA 9 TplWRrgpdgnktLCnaCGlyyrkk 33 TplWR+gp ++ LCnaCG +y+k Glyma.09G076800.1.p 7 TPLWRNGPVDKPVLCNACGTRYKKG 31 ********77777**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0065 | 1 | 44 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.65E-11 | 4 | 58 | No hit | No description |
Pfam | PF00320 | 2.1E-10 | 6 | 31 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-8 | 7 | 31 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-7 | 7 | 33 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MNIVPFTPLW RNGPVDKPVL CNACGTRYKK GDLDNYLPKN VHPQLHHNNF KNVNGESHFN 60 AEESLSNHIP PITTSNGDNY KSSSDVHHIS AQDFEKKIPS RKRSSVVYKP MTPMEKFQKQ 120 LLSLYRSERQ PEESLLVDNV NNFIPENEIG LGAILLKTDD AASTDPGSAN R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G076800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235453 | 1e-144 | AC235453.1 Glycine max strain Williams 82 clone GM_WBb0167A12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025985239.1 | 2e-76 | GATA transcription factor 26 | ||||
TrEMBL | A0A0R0IF15 | 1e-124 | A0A0R0IF15_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G19681.1 | 4e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12747 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 3e-12 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G076800.1.p |