PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G072000.1.p | ||||||||
Common Name | GLYMA_09G072000, Glyma09g08330.1, LOC100802508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23875.2 Da PI: 4.2991 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 20 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g++v+eIr p++ r+r++lg++++ae+Aa+a +aa+ +l+g Glyma.09G072000.1.p 20 SSYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAEKAARAFDAAMFCLRG 70 67*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-19 | 20 | 79 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.86E-29 | 20 | 78 | No hit | No description |
Pfam | PF00847 | 7.0E-11 | 20 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-29 | 21 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.035 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVKPKSVEKP AEEQQQRSVS SYRGVRKRKW GKYVSEIRLP NSRQRIWLGS YDSAEKAARA 60 FDAAMFCLRG SGAKFNFPSD PPNIAGGGNM TSSQIQIAAA RFANSEPRNE RSDQPVESLT 120 SDEETASFPV ISDTDTSSPP LSDVTFQNDA ELVTGSFPDM FSDFGSGDFV PDFSDFPSFD 180 DFSRDFFLHE LPGFNFGEEN LDGLIIQDSF LWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-16 | 20 | 80 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.5501 | 0.0 | cotyledon| leaf| pod| stem| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G072000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031083 | 0.0 | KT031083.1 Glycine max clone HN_CCL_204 AP2-EREBP transcription factor (Glyma09g08330.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533795.1 | 1e-155 | ethylene-responsive transcription factor ERF017 | ||||
Refseq | XP_028248625.1 | 1e-155 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A445IY13 | 1e-153 | A0A445IY13_GLYSO; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | I1L1S9 | 1e-153 | I1L1S9_SOYBN; AP2-EREBP transcription factor | ||||
STRING | GLYMA09G08330.1 | 1e-154 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 6e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G072000.1.p |
Entrez Gene | 100802508 |
Publications ? help Back to Top | |||
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