PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G068700.1.p | ||||||||
Common Name | GLYMA_09G068700, LOC100814271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRF | ||||||||
Protein Properties | Length: 366aa MW: 41535 Da PI: 8.1853 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 1e-24 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Glyma.09G068700.1.p 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120 79***************************************987 PP | |||||||
2 | QLQ | 56.8 | 6.6e-20 | 9 | 43 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+ Glyma.09G068700.1.p 9 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 43 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-11 | 8 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.6E-15 | 9 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.36 | 9 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MMNGRNRFPF TPSQWQELEH QALIYKYMAS GISIPPDLLF TIKRSYFDSP LSSRLLPNQP 60 QHFGWNYLQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE 120 VLKTTTPSST MTTTNTNSNA SSTQQAISSI TKINTLSPLA SSETHQHHPQ HYGSFLYHHH 180 PPSRSSGIGL SFEDNRAPLF LDTGSCSQSN TDCRSRYVYG EKEEVDEHAF FTEPCGVMKS 240 FSASSMDDSW QLTPLTMSSS SSSSKQRSSF GLSSDYSCLQ LQSHSKQQQQ EHHQDQGCYM 300 FGGGQVVKEE PQKTVHRFFD EWPHKGREGS WLDLDDKSST TQLSISIPTC SHDFPTFSSR 360 NHHDG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27872 | 0.0 | cotyledon| hypocotyl| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G068700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-122 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534945.2 | 0.0 | growth-regulating factor 1 | ||||
Refseq | XP_028179795.1 | 0.0 | growth-regulating factor 1-like | ||||
TrEMBL | A0A445IY89 | 0.0 | A0A445IY89_GLYSO; Growth-regulating factor 4 | ||||
TrEMBL | I1L1P0 | 0.0 | I1L1P0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G07990.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-54 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G068700.1.p |
Entrez Gene | 100814271 |