PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G068400.2.p | ||||||||
Common Name | GLYMA_09G068400, LOC100793856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 225aa MW: 24683.7 Da PI: 10.198 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 7.2e-33 | 66 | 122 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF Glyma.09G068400.2.p 66 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 122 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.7E-37 | 64 | 125 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.224 | 65 | 125 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.1E-28 | 68 | 122 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.0E-25 | 68 | 90 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 70 | 90 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.0E-25 | 99 | 122 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPNLNPTLQV LASSYPYQIP KAHSSYPYGD PIFAYGPQAI SHPQMIPPML GLASTRVALP 60 LDLAEDGPIY VNAKQYHGIL RRRQSRAKLE AQNKLIKNRK PYLHESRHRH ALNRVRGSGG 120 RFLSTKQLAQ SNAEFVTGAH SGSDPTNRYQ KEHLSEVESH SSKDGDNSSF ITTCSDRPCL 180 SGNNVNFRQQ ECMFLGNSAN MGGSPQFSGG LTFGGAKQRT SVVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-23 | 66 | 127 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G068400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099370 | 0.0 | BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014617459.1 | 1e-167 | nuclear transcription factor Y subunit A-9 isoform X1 | ||||
Refseq | XP_028248029.1 | 1e-167 | nuclear transcription factor Y subunit A-3-like isoform X2 | ||||
Swissprot | Q9LNP6 | 3e-38 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | A0A0R0IC47 | 1e-166 | A0A0R0IC47_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G07960.4 | 1e-149 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 1e-40 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G068400.2.p |
Entrez Gene | 100793856 |
Publications ? help Back to Top | |||
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