PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G068400.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 229aa    MW: 25223.3 Da    PI: 9.9498
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G068400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.4e-3370126158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF
  Glyma.09G068400.1.p  70 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 126
                          57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.7E-3768129IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.22469129IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-2872126IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-247294IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607494IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-24103126IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MKPFLFLNLP NTEFNSSQVD CNHSMAHSSY PYGDPIFAYG PQAISHPQMI PPMLGLASTR  60
VALPLDLAED GPIYVNAKQY HGILRRRQSR AKLEAQNKLI KNRKPYLHES RHRHALNRVR  120
GSGGRFLSTK QLAQSNAEFV TGAHSGSDPT NRYQKEHLSE VESHSSKDGD NSSFITTCSD  180
RPCLSGNNVN FRQQECMFLG NSANMGGSPQ FSGGLTFGGA KQRTSVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2370131263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G068400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993700.0BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349752.11e-171nuclear transcription factor Y subunit A-9
RefseqXP_028248028.11e-171nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A0B2PSG71e-170A0A0B2PSG7_GLYSO; Nuclear transcription factor Y subunit A-3
STRINGGLYMA09G07960.41e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-40nuclear factor Y, subunit A3