PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G062800.1.p
Common NameGLYMA_09G062800, LOC100792098
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 338aa    MW: 38169.7 Da    PI: 10.3819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G062800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19182215134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp g+ktLCnaCG+++rk +
  Glyma.09G062800.1.p 182 CSDCHTTKTPLWRSGPKGPKTLCNACGIRQRKAR 215
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.43E-13176217No hitNo description
PROSITE profilePS5011412.756176212IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-19176227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-16180215IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.12E-14181213No hitNo description
PfamPF003206.9E-17182215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MIPTYRYSVS SPMPIDLNED HTHHVFSTSH QASSSSSSLS FSILFNPDHQ GQGGSCCHWE  60
SKHLQSDEEA QKIVPSSESW EHPVSEKDEN RSDLKLRVWK KEDKCENFQV EDNSTKWMPL  120
KMRMMRRMMV SDQTGFDTEG MISNSKQIKN EEKNPPLTPL GTDDSNNYNS SANHSKITVR  180
VCSDCHTTKT PLWRSGPKGP KTLCNACGIR QRKARRAIAV AATANGMNPV EAEKSQVKKG  240
NKLHSKGMKS KTKGAPHMKK KRKLGAKYRK RFGAFEDLTV RLSKNLALQK VFPPDEKEAA  300
ILLMALSLWP SSWLSHRSLR QLLRFMRYIG GKTIIIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.231690.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G062800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617452.20.0LOW QUALITY PROTEIN: GATA transcription factor 21
RefseqXP_028248690.10.0GATA transcription factor 21-like
TrEMBLI1L1G90.0I1L1G9_SOYBN; Uncharacterized protein
STRINGGLYMA09G07090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-15cytokinin-responsive gata factor 1