PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G059700.1.p
Common NameGLYMA_09G059700, LOC100816912
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 715aa    MW: 81001.8 Da    PI: 8.411
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G059700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-094995421053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          + +e L ++F++n  p ++ +  L+k+lgL+ ++V+ WF+N R+
  Glyma.09G059700.1.p 499 DAVEKLRQAFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARY 542
                          57899*************************************97 PP
2PHD39.71.1e-13234289151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C+   +  +++++lCd +C+++fH+ Cl+++l++e++p g   w+C+ C++k
  Glyma.09G059700.1.p 234 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 289
                          699999954445********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-14226291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-12231290IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638232289IPR019787Zinc finger, PHD-finger
PfamPF006281.1E-10234289IPR019787Zinc finger, PHD-finger
SMARTSM002493.8E-9234287IPR001965Zinc finger, PHD-type
CDDcd155042.79E-29234286No hitNo description
PROSITE patternPS013590235286IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.8E-10476541IPR009057Homeodomain-like
PROSITE profilePS5007111.37487547IPR001356Homeobox domain
SMARTSM003895.7E-7489551IPR001356Homeobox domain
SuperFamilySSF466895.56E-9490553IPR009057Homeodomain-like
CDDcd000861.06E-7495542No hitNo description
PfamPF000465.1E-7499542IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRDVDSLNSE GSGKSSYSQE QTMSKLVSSK FKTSSTKCQE KKHKVKLKSH KHRAGTNKSK  60
KTVTDSSIKA PLEDSSNKKV IIRKYRHKTD GKSSRMLSST KLEGGKNSHS SGIEGNDVDG  120
EEKIKKHKRR KKKRQRNNMD VDDASRLRRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK  180
IRPEKELLRA KKQILKCKLN IRDAIRQLDS LSSVGSIEDS AIAPDGSVYH ENIFCANCKL  240
HEAFPDNDII LCDGTCNRAF HQRCLNPPLD TENIPPGDQG WFCKFCECKI EILEATNAHL  300
GTQFSLDSTW QDVFKEEASM PDGDIALLNP EEEWPSDDPE DDDYNPEKKE DSHSIDIEGD  360
DGNASNDSTS SSSLWSLNGE CPPVDEGVSH EYYSVNSCID SNESGEIACG PRQRKAVDYK  420
KLYDEMFGKD APPCEQVSED EDWGPGKRKR REKESDAVNT LMTLHESENK HSNNEKNDTT  480
REGSSGIQIR RSCFRIPVDA VEKLRQAFAE NELPPRSVKD SLSKELGLDP EKVSKWFKNA  540
RYLALKTRRY QSEGEQLQSF TSKISTDSIS QIVEKDELLK STVSKITVIH SQKDGKNITG  600
KEKNNLSDSL LKKRQQQEIP PPLERENGNK DSMEVSNDVK LKKMLKKRKR GVNIIFEGDS  660
QAAELEFERL SKVKRKLDSM KQKLNEVQNC RAKGSNEPSI IYVPTAQLRE KVEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132KKHKRRKKK
2125135KHKRRKKKRQR
3127133KRRKKKR
4128133RRKKKR
5130135KKKRQR
6447452RKRREK
7640648LKKMLKKRK
8642648KMLKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.139990.0root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G059700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979341e-161BT097934.1 Soybean clone JCVI-FLGm-16O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533738.10.0pathogenesis-related homeodomain protein
RefseqXP_028248116.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-159PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A445IXF00.0A0A445IXF0_GLYSO; Pathogenesis-related homeodomain protein
TrEMBLK7LC200.0K7LC20_SOYBN; Uncharacterized protein
STRINGGLYMA09G06730.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-101pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]