PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G053000.1.p

Common Name

GLYMA_09G053000, LOC100807295

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 138aa MW: 15348 Da PI: 5.1184

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G053000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.6e-18	19	70	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ +l+g+ Glyma.09G053000.1.p 19 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIALRGA 70 8******.******97744...688********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.7E-30	19	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.499	19	77	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-11	19	69	IPR001471	AP2/ERF domain
CDD	cd00018	1.09E-28	19	78	No hit	No description
SMART	SM00380	3.9E-34	19	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-22	19	79	IPR016177	DNA-binding domain
PRINTS	PR00367	7.9E-11	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.9E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MEEARKGEQE KERGEEEVKY RGVRKRPWGK FGAEIRDPTK PTGRQWLGTF DTAEEAARAY 60 DRAAIALRGA LAILNFPHEF HSHLPFISSS SSSSCSSTGV VGSSSSAQQG EVIEFEYLDD 120 KVLEDLLELE EKRGKKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-31	14	122	9	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36612	1e-125	epicotyl

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G053000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091458	1e-123	BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003534873.1	7e-96	ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	7e-40	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	I1L178	2e-94	I1L178_SOYBN; Uncharacterized protein
STRING	GLYMA09G05860.1	3e-95	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	5e-12	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G053000.1.p
Entrez Gene	100807295

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]