PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G034300.1.p
Common NameGLYMA_09G034300, LOC100127422
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 332aa    MW: 36583.6 Da    PI: 8.1012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G034300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.46.9e-34184242159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v++tYeg+H+h+
  Glyma.09G034300.1.p 184 LDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPSMVVTTYEGQHTHP 242
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-36169244IPR003657WRKY domain
SuperFamilySSF1182903.14E-30176244IPR003657WRKY domain
PROSITE profilePS5081133.419179244IPR003657WRKY domain
SMARTSM007747.2E-41184243IPR003657WRKY domain
PfamPF031066.9E-28185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAEEKRQEQV ANPNNSSSTT MPFSDQIPNN NNSIMMTFPF QQPSTIFDLM MMPSSSSFMD  60
LLAVQDYNVP LFDWLPAGVA HHPSPSPASS NVPDSSEVLN TPASPNFSSI SSSSNEATVN  120
NNSEQQSGKE LQEEEGGNGG RGDNQDQDKT KKQLKAKKKK KKKNQKKQRE PRFAFMTKSE  180
VDHLDDGYKW RKYGQKAVKN SPYPRSYYRC TSAGCGVKKR VERSSEDPSM VVTTYEGQHT  240
HPCPASARSS LGFVTQPAAF GPSHFMLPHQ AQASALSVVS SSSNYINTTS FGGFVQDHST  300
RRGFGHEALL RDNGLLQDII VPTQVTKEEM D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-291772451078Probable WRKY transcription factor 4
2lex_A4e-291772451078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162KKKKKKK
2157166KKKKKKNQKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366960.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G034300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195680.0EU019568.1 Glycine max WRKY26 (WRKY26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348287.10.0WRKY transcription factor 26
SwissprotO229002e-51WRK23_ARATH; WRKY transcription factor 23
TrEMBLI1L0P80.0I1L0P8_SOYBN; Uncharacterized protein
STRINGGLYMA09G03900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]