PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G032100.1.p
Common NameGLYMA_09G032100, LOC100805341
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 341aa    MW: 38444.4 Da    PI: 6.7862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G032100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-182875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Glyma.09G032100.1.p 28 RGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 75
                         89********************************************97 PP
2Myb_DNA-binding48.42.1e-1581124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.09G032100.1.p  81 RGNITLEEQLLILELHGRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5892379IPR017930Myb domain
SuperFamilySSF466891.16E-3025122IPR009057Homeodomain-like
SMARTSM007171.4E-142777IPR001005SANT/Myb domain
PfamPF002493.6E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-222982IPR009057Homeodomain-like
CDDcd001672.17E-113075No hitNo description
SMARTSM007171.0E-1380128IPR001005SANT/Myb domain
PROSITE profilePS5129417.99480130IPR017930Myb domain
PfamPF002493.7E-1481124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2283129IPR009057Homeodomain-like
CDDcd001672.98E-796124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEVKGIRASN STTTTTTIQS EDEMDLRRGP WTVDEDLALI NYIANHGEGR WNSLARSAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHGRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLKCDVNSK QFKDAMRYLW MPRLVERIQA AAAATTTVAA AGSPTASASA  180
TTTITTNNNT TTYNYYDNNN LNNSFEVHSG NMMVRNPTIM NNNNFCGSHS YTPENSSTGA  240
SSDSFGTQVS PVSDLTQDYY NNVTAGNNNN NNPNPDQYYQ QAHDQLSFLD CITSPSGLFD  300
FQPMEPNTPW INLSNVGDTS NGFWNVENML LFQQFSDNNM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.263700.0meristem| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G032100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533124.10.0transcription factor MYB108
TrEMBLI1L0M90.0I1L0M9_SOYBN; Uncharacterized protein
STRINGGLYMA09G03690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-85myb domain protein 78