PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G029800.1.p | ||||||||
Common Name | GLYMA_09G029800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 515aa MW: 56311.5 Da PI: 6.5095 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.6e-31 | 268 | 326 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Glyma.09G029800.1.p 268 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 326 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 32.822 | 262 | 328 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-31 | 262 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 265 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 267 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-26 | 269 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 515 aa Download sequence Send to blast |
MYCSSIIMDN YQGDLTDILR ASGGAYGSTG TGTGTSSSDQ LHTTSHHHHH SSSHTTLSHN 60 DHWHHHQHFS SSSSDPPITF SSSSSVLIQD TNFGDPFSTM RDPFLQELDM PSASAYFTGG 120 ALELEAAATF GSVTNNTTSS TTATTVFATA HKILEEHDNN NMRRPCKNIF SNMIQISPNA 180 KLPISPYDST NTAMAPSPRP IKPPALVSPN MVMNANTSKE CLVDTTGVQI SSPRNPGLKR 240 RKNQAKKVVC IPAPAAANSR QTGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS 300 ARKQVERSRN DPNMLVITYT SEHNHPWPKQ RNALAGSTRS QPSKNNNNAA ASNSKNSEGS 360 NSQKGTATKA KDDEESNNYN NSSEGNVSPV VAGNSSNSVK EENMEDIEKH QIEMDEGEFS 420 DGIPYKPSLM DHQSTNNQQS EDFFAELGEI EADPLDLLFT QGFGGADDQR ESKALDPFHL 480 FDWSGNNNNN NNTSSSFEEP NNKRRTVREI KLVE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-24 | 242 | 328 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 9e-24 | 242 | 328 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G029800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534796.2 | 0.0 | probable WRKY transcription factor 14 isoform X1 | ||||
TrEMBL | A0A0R0I318 | 0.0 | A0A0R0I318_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G03451.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5430 | 34 | 54 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30650.1 | 3e-85 | WRKY DNA-binding protein 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G029800.1.p |