PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G023800.4.p

Common Name

GLYMA_09G023800, LOC100784325

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 205aa MW: 22699.9 Da PI: 6.6325

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G023800.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.5	1.6e-31	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF Glyma.09G023800.4.p 109 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 165 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.0E-35	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.416	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.2E-27	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTSTHDLSDN EADDQQQSES QMEPLSANGI SYAGIATQNV QYATPSQLGT GHAVVPPTYP 60 YPDPYYRSIF APYDAQTYPP QPYGGNPMVH LQLMGIQQAG VPLPTDTVEE PVFVNAKQYH 120 GILRRRQSRA KAESEKKAAR NRKPYLHESR HLHALRRARG CGGRFLNSKK DENQQDEVAS 180 TDESQSTINL NSDKNELAPS DRTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	108	173	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G023800.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001349750.1	1e-151	nuclear transcription factor Y subunit A-8
Refseq	XP_003535083.1	1e-151	nuclear transcription factor Y subunit A-8 isoform X1
Refseq	XP_028180342.1	1e-151	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_028180343.1	1e-151	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q84JP1	1e-69	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A445IVV3	1e-150	A0A445IVV3_GLYSO; Nuclear transcription factor Y subunit A-7 isoform C (Fragment)
STRING	GLYMA09G02770.2	1e-151	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-53	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Glyma.09G023800.4.p
Entrez Gene	100784325

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]