PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G023600.2.p | ||||||||
Common Name | GLYMA_09G023600, LOC100779499 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 92779.7 Da PI: 6.2125 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Glyma.09G023600.2.p 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 166.6 | 1.8e-52 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l + +g g Glyma.09G023600.2.p 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVDVLSIVPTGngG 255 68999*****************************************************.8888888888********************* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ s +vRae+lpSg+l++p+++g+s +++v+h+dl+ + Glyma.09G023600.2.p 256 TIELLYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTTFVRAEMLPSGFLVRPCEGGGSIIHIVDHIDLDVW 345 *********************************************999999999************************************ PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 +++++lr+l++s+ + ++k + a+lq+ + Glyma.09G023600.2.p 346 SVPEVLRPLYESSKFLAQKLTIAALQHIR 374 **************************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-16 | 15 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.14E-16 | 18 | 78 | No hit | No description |
Pfam | PF00046 | 3.1E-16 | 18 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.79E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 25.633 | 157 | 358 | IPR002913 | START domain |
CDD | cd08875 | 3.53E-68 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.4E-21 | 165 | 350 | IPR023393 | START-like domain |
SMART | SM00234 | 5.1E-48 | 166 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.36E-35 | 167 | 378 | No hit | No description |
Pfam | PF01852 | 5.1E-50 | 167 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.91E-5 | 414 | 499 | No hit | No description |
SuperFamily | SSF55961 | 5.91E-5 | 527 | 601 | No hit | No description |
Pfam | PF08670 | 6.1E-49 | 701 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MALSMHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ 120 QIHTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC 240 RCVDVLSIVP TGNGGTIELL YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS 300 TGGPTGPPST TFVRAEMLPS GFLVRPCEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKF 360 LAQKLTIAAL QHIRQIAQES SGEIQYSGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL 420 MGTDGVEDVT IAINSSPNKF LGSNYNASMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE 480 HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSTQVIL PLAHTIEHEE FLEVVRIEGH 540 AFSPEDVALA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP 600 KSDGPAATRT LDLASTMEVG SGNARPAGEA DLNGYNLRSV LTIAFQFTFE NHTRDNVAAM 660 ARQYVRSVVG SVQRVAMAIA PSRFNTQLGP KSLSGSPEAL TLARWICRSY RVHTGTELFK 720 AESTAGDAIL KQLWHHPDAI ICCSVKTNAS PVFTFSNQAG LDMLETTLVS LQDIMLDKVL 780 DESGRKILCS EFSKIMQQGF ASLPAGICVS SMNRPVSYEQ VVAWKVLNDD DSNHCLAFMF 840 INWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.2140 | 0.0 | meristem| root| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G023600.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535078.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 isoform X2 | ||||
Refseq | XP_028181195.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like isoform X2 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A0B2QT24 | 0.0 | A0A0B2QT24_GLYSO; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | I1L0E4 | 0.0 | I1L0E4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G02750.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G023600.2.p |
Entrez Gene | 100779499 |