PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G023600.1.p
Common NameGLYMA_09G023600, LOC100779499
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 853aa    MW: 93475.4 Da    PI: 6.2125
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G023600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181876357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.09G023600.1.p 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                         6789*****************************************************97 PP
2START166.61.8e-521673742204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l  + +g  g
  Glyma.09G023600.1.p 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVDVLSIVPTGngG 255
                          68999*****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   s  +vRae+lpSg+l++p+++g+s +++v+h+dl+ +
  Glyma.09G023600.1.p 256 TIELLYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTTFVRAEMLPSGFLVRPCEGGGSIIHIVDHIDLDVW 345
                          *********************************************999999999************************************ PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s+ + ++k + a+lq+ +
  Glyma.09G023600.1.p 346 SVPEVLRPLYESSKFLAQKLTIAALQHIR 374
                          **************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.711377IPR001356Homeobox domain
SMARTSM003898.6E-161581IPR001356Homeobox domain
SuperFamilySSF466891.41E-161880IPR009057Homeodomain-like
CDDcd000861.16E-161878No hitNo description
PfamPF000463.1E-161876IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182076IPR009057Homeodomain-like
CDDcd146861.81E-670109No hitNo description
PROSITE profilePS5084825.633157358IPR002913START domain
CDDcd088753.64E-68161377No hitNo description
Gene3DG3DSA:3.30.530.201.4E-21165350IPR023393START-like domain
SMARTSM002345.1E-48166376IPR002913START domain
SuperFamilySSF559611.37E-35167378No hitNo description
PfamPF018525.2E-50167374IPR002913START domain
SuperFamilySSF559616.04E-5414499No hitNo description
SuperFamilySSF559616.04E-5527601No hitNo description
PfamPF086703.1E-45701851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MALSMHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ  120
QIHTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC  240
RCVDVLSIVP TGNGGTIELL YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS  300
TGGPTGPPST TFVRAEMLPS GFLVRPCEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKF  360
LAQKLTIAAL QHIRQIAQES SGEIQYSGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL  420
MGTDGVEDVT IAINSSPNKF LGSNYNASMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSTQVIL PLAHTIEHEE FLEVVRIEGH  540
AFSPEDVALA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP  600
KSDGPAATRT LDLASTMEVG SGNARPAGEA DLNGYNLRSV LTIAFQFTFE NHTRDNVAAM  660
ARQYVRSVVG SVQRVAMAIA PSRFNTQLGP KSLSGSPEAL TLARWICRSY RVHTGTELFK  720
AESTAGDAIL KQLWHHPDAI ICCSVKTNAS PVFTFSNQAG LDMLETTLVS LQDIMLDKVL  780
DESGRKILCS EFSKIMQQFS VSFQGFASLP AGICVSSMNR PVSYEQVVAW KVLNDDDSNH  840
CLAFMFINWS FV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.21400.0meristem| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}.
UniprotTISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G023600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617344.10.0homeobox-leucine zipper protein ATHB-14 isoform X1
RefseqXP_028181194.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLK7LBF50.0K7LBF5_SOYBN; Uncharacterized protein
STRINGGLYMA09G02750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]