PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G017300.1.p

Common Name

GLYMA_09G017300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 315aa MW: 34308 Da PI: 7.1016

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G017300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Glyma.09G017300.1.p 43 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-32	40	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.569	40	100	IPR017930	Myb domain
TIGRFAMs	TIGR01557	7.8E-24	43	98	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.27E-16	43	99	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-15	138	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MYPRLIHPHD GIVTQDELQG GAASNLSHAH KGDPCLVLTA DPKPRLRWTQ DLHERFVDAV 60 TQLGGASKAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKDVGEGCK DGSYLLESPG 120 ADNTSPKLPT PDTNEGYEIK EALRAQMEVQ SKLHLQVEAE KHLQIRQDAE RRYMAMLERA 180 CKMLADQFIS ATVIDTDSQK FQGIGSKAPR GTLVDPLGFY SLPSTEVAGV NVPEEEILPS 240 LPPQRADCST ESCLTSHESS GGLALEGSPG EGKRRMLGMD SMAAPLIWSE AKMRTQAINV 300 AQGNHPQGIT RYGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4165	0.0	cotyledon\| flower\| hypocotyl\| root\| seed coat\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G017300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094230	0.0	BT094230.1 Soybean clone JCVI-FLGm-24P5 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242009.2	0.0	MYB-CC domain-containing transcription factor PHR13
Refseq	XP_028180000.1	0.0	protein PHR1-LIKE 2-like
Swissprot	Q94A57	8e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A445IVL4	0.0	A0A445IVL4_GLYSO; Protein PHR1-LIKE 2 isoform A
TrEMBL	I1L075	0.0	I1L075_SOYBN; Uncharacterized protein
STRING	GLYMA09G02030.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G017300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]