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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.09G011800.1.p |
| Common Name | GLYMA_09G011800, LOC100817987 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
GRAS |
| Protein Properties |
Length: 549aa MW: 61274.9 Da PI: 6.2277 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G011800.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 423.5 | 1.7e-129 | 175 | 546 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
l+e+L++cA+av+++d e a ++++ l +++s gdp+qRl ay++e+L+arl +s+s +ykal++++ + s + +++++++++++P
Glyma.09G011800.1.p 175 LKEVLIRCAQAVADDDIETAVGFMNNvLAKMVSVGGDPIQRLGAYMLEGLRARLESSGSIIYKALKCEQPT---SNDLMTYMHILYQICP 261
5789********************872566799999**********************************9...89999999******** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
+ kf++ aN I ea+ +e+r+HiiDf++ qG+QW+ L+qaLasRp+g+p +R+Tgv++++s+ + l+ +g+rL+++A+++gvpfe
Glyma.09G011800.1.p 262 YWKFAYTSANAVIGEAMLNESRIHIIDFQVAQGTQWLLLIQALASRPGGAPFIRVTGVDDSQSFhaRGGGLHIVGKRLSDYAKSCGVPFE 351
************************************************************9999889999******************** PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
f+ +a ++lele+L ++pgEal+Vn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy+a+
Glyma.09G011800.1.p 352 FHS-AAMCGSELELENLVIQPGEALVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYTAM 440
***.899*********************************************************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
f+s+++ lpr++++ri+ E+++++r+ivn+vaceg+er erhe l+kWr+r+++aGF p pls+++++ ++ +l++++++ yr+++++g+
Glyma.09G011800.1.p 441 FESIDVALPRDDKQRINAEQHCVARDIVNMVACEGDERLERHELLGKWRSRFSMAGFAPCPLSSSVTAAVRNMLNEFNEN-YRLQHRDGA 529
******************************************************************************55.********* PP
GRAS 358 lvlgWkdrpLvsvSaWr 374
l+lgWk+r++ + SaWr
Glyma.09G011800.1.p 530 LYLGWKSRAMCTSSAWR 546
****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 549 aa
Download sequence Send
to blast |
MQTSKKHPTS AGIHLYLQPA QDIDPYTHYQ ILQSNSCHDN SSSQGTTISF ETSKEQYFTL 60
ESSPAINDLI GCDSPSYASV SSNRSPFSPQ ASHSDQHQSS DNTYGSPTSA HSRYDDDGYE 120
LKNKLRELEI SLLGPDSDIV DSWHCSYKGG RHRASSPTAK HNWDQIVEMI PKLDLKEVLI 180
RCAQAVADDD IETAVGFMNN VLAKMVSVGG DPIQRLGAYM LEGLRARLES SGSIIYKALK 240
CEQPTSNDLM TYMHILYQIC PYWKFAYTSA NAVIGEAMLN ESRIHIIDFQ VAQGTQWLLL 300
IQALASRPGG APFIRVTGVD DSQSFHARGG GLHIVGKRLS DYAKSCGVPF EFHSAAMCGS 360
ELELENLVIQ PGEALVVNFP FVLHHMPDES VSTENHRDRL LRLVKSLSPK VVTLVEQESN 420
TNTSPFFQRF VETLSYYTAM FESIDVALPR DDKQRINAEQ HCVARDIVNM VACEGDERLE 480
RHELLGKWRS RFSMAGFAPC PLSSSVTAAV RNMLNEFNEN YRLQHRDGAL YLGWKSRAMC 540
TSSAWRCY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
