PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G005700.1.p | ||||||||
Common Name | GLYMA_09G005700, LOC100127376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 542aa MW: 58108.7 Da PI: 7.3595 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 286 | 344 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ Glyma.09G005700.1.p 286 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRTILVTTYEGTHNHP 344 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-33 | 270 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-28 | 278 | 346 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.471 | 280 | 346 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 287 | 344 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MDKGWVSSQS LLPPTPDNTM FPLLGFPVKL SRPTMELHHD NRKLVAEVDF FSHTPPPNIV 60 KKELDQTPLH INTGLQLLTA NTRSDQSTVD DGLSSDAEDK RAKTTELAQL QVELQRMNAE 120 NKKLKEMLSH VTGNYTALQM HLVTLMQQNQ QRTESTENGV AQGKVEDKNH GVGGGKVPRQ 180 FLDIGPSGTA EVDDQVSDSS SDERTRSSTP QDNNTEAGTR DGARNNNGNK SELGREESPD 240 SESQGWGPNK LQKVNPSNPM DQSTAEATMR KARVSVRARS EAPMISDGCQ WRKYGQKMAK 300 GNPCPRAYYR CTMAVGCPVR KQVQRCADDR TILVTTYEGT HNHPLPPAAM AMASTTAAAA 360 TMLLSGSMSS ADGVMNPNLL ARAILPCSTS MATLSASAPF PTVTLDLTHN PNPLQFQRPG 420 APFQVPFLQA QPQNFGSGAT PIAQALYNQS KFSGLQLSQD VGSSQLAPQA PRPPLQPSQH 480 PSLADTVSAA ASAITSDPNF TAVLAAAISS IIGGAHNSNN NNNNNSNNNT SRTTISSFSG 540 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 272 | 348 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28283 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G005700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019565 | 0.0 | EU019565.1 Glycine max WRKY23 (WRKY23) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348208.1 | 0.0 | WRKY transcription factor 23 | ||||
Refseq | XP_028180922.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-152 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A445IV03 | 0.0 | A0A445IV03_GLYSO; WRKY transcription factor 6 | ||||
TrEMBL | I1KZU8 | 0.0 | I1KZU8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G00820.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-126 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G005700.1.p |
Entrez Gene | 100127376 |