PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G001500.1.p
Common NameGLYMA_09G001500, LOC100793689
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 307aa    MW: 35132.9 Da    PI: 6.1707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G001500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-121156146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+W+ eEde l++ v ++G++ W++I ++  + Rt+k+c++rw +
  Glyma.09G001500.1.p 11 KGPWSSEEDEVLLRHVSKYGPREWSSIRSKGLLPRTGKSCRLRWVN 56
                         79*************************8876677**********87 PP
2Myb_DNA-binding48.22.5e-1567107345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++T+eE+ l +++ +q+G++ W++Ia +++ gRt++++k++w 
  Glyma.09G001500.1.p  67 KFTAEEERLVIELQAQYGNK-WAKIATYLQ-GRTDNDVKNFWS 107
                          79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.718658IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-20959IPR009057Homeodomain-like
SuperFamilySSF466891.01E-289106IPR009057Homeodomain-like
SMARTSM007171.3E-111060IPR001005SANT/Myb domain
CDDcd001674.38E-111358No hitNo description
PfamPF139211.7E-111464No hitNo description
PROSITE profilePS5129422.33259114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-1860112IPR009057Homeodomain-like
SMARTSM007175.5E-1364112IPR001005SANT/Myb domain
PfamPF002499.1E-1467107IPR001005SANT/Myb domain
CDDcd001672.98E-1167106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEIRELEMIK KGPWSSEEDE VLLRHVSKYG PREWSSIRSK GLLPRTGKSC RLRWVNKLRP  60
NLKTGCKFTA EEERLVIELQ AQYGNKWAKI ATYLQGRTDN DVKNFWSSRR KRLERMLQKP  120
PASKPKKNKG KAHLNQVQQV EEMVPPCSSN QVEEILSYAT SYMGNTLVFE MINLQDLIKP  180
NYQQLENDYL SAVEVDATPL HTVPSFESSS GYNFPLLPEP EPLLDFPLFP ECQDLVPEPF  240
DPNFVYGFEE KKCLQCACSS SQKLGTRLPT FGLEGNSQSA SSNGFFKDFP SEIFEYFEHI  300
PTSSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-27911225126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G001500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534696.10.0probable transcription factor MYB58
RefseqXP_028180690.10.0probable transcription factor MYB58
TrEMBLA0A445IUV60.0A0A445IUV6_GLYSO; Putative transcription factor MYB58
TrEMBLK7LB180.0K7LB18_SOYBN; Uncharacterized protein
STRINGGLYMA09G00371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-64MYB family protein