PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G360200.1.p
Common NameGLYMA_08G360200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 225aa    MW: 25619 Da    PI: 9.7837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G360200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.5e-50141391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv +yLk+kv + +l++ ++i+e++++k++PwdLp      e+e yfFs++  ky++g+r+nrat+sgyWkatg dk
  Glyma.08G360200.1.p  14 LPPGFRFHPTDEELVLQYLKRKVFSCPLPA-SIIPELHVCKSDPWDLPGD---LEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDK 99 
                          79****************************.89***************54...46799******************************** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++  ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Glyma.08G360200.1.p 100 QIVTSkgNNQVVGMKKTLVFYRGKPPNGSRTDWIMHEYRL 139
                          ***99777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5910164IPR003441NAC domain
PROSITE profilePS5100556.3814164IPR003441NAC domain
PfamPF023654.1E-2715139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEKVNFVKNG ELRLPPGFRF HPTDEELVLQ YLKRKVFSCP LPASIIPELH VCKSDPWDLP  60
GDLEQERYFF STKVAKYPNG NRSNRATNSG YWKATGLDKQ IVTSKGNNQV VGMKKTLVFY  120
RGKPPNGSRT DWIMHEYRLI LNASQSQSHV VPMENWVLCR IFLKRRIGAK NGEESNSKVV  180
FYDFLAQNKT DSSSSVASGI THESDEHEES SSSNTFPYTI RRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-501116514166NO APICAL MERISTEM PROTEIN
1ut4_B5e-501116514166NO APICAL MERISTEM PROTEIN
1ut7_A5e-501116514166NO APICAL MERISTEM PROTEIN
1ut7_B5e-501116514166NO APICAL MERISTEM PROTEIN
3swm_A5e-501116517169NAC domain-containing protein 19
3swm_B5e-501116517169NAC domain-containing protein 19
3swm_C5e-501116517169NAC domain-containing protein 19
3swm_D5e-501116517169NAC domain-containing protein 19
3swp_A5e-501116517169NAC domain-containing protein 19
3swp_B5e-501116517169NAC domain-containing protein 19
3swp_C5e-501116517169NAC domain-containing protein 19
3swp_D5e-501116517169NAC domain-containing protein 19
4dul_A5e-501116514166NAC domain-containing protein 19
4dul_B5e-501116514166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268920.0cotyledon| hypocotyl| leaf| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G360200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0899630.0BT089963.1 Soybean clone JCVI-FLGm-3C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238630.21e-169NAC domain-containing protein
RefseqXP_028246492.11e-169NAC domain-containing protein 83-like
SwissprotQ9FY935e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2QZ841e-167A0A0B2QZ84_GLYSO; NAC domain-containing protein 29
TrEMBLI1KZG01e-167I1KZG0_SOYBN; Uncharacterized protein
STRINGGLYMA08G47520.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-94NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]