PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G344500.1.p
Common NameGLYMA_08G344500, LOC100812623
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 283aa    MW: 31155.8 Da    PI: 6.3848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G344500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.52.1e-141851134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         Cs+Cg+t+TplW+ gp  ++ LC+ CG  y++kg
  Glyma.08G344500.1.p 18 CSHCGVTHTPLWHDGPTEKPVLCSDCGSQYKLKG 51
                         ****************99999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-61274IPR000679Zinc finger, GATA-type
CDDcd002029.44E-111751No hitNo description
SuperFamilySSF577164.75E-101768No hitNo description
PROSITE profilePS5011410.1321866IPR000679Zinc finger, GATA-type
PfamPF003204.4E-121852IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-91852IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MALVGEQKHS LMVKKGPCSH CGVTHTPLWH DGPTEKPVLC SDCGSQYKLK GNLDNYFPKN  60
PVVQSFHNKF TNVNGGKHLN VDVDQLSNYV PPTDEDNNMS TPNVHCISAQ ATPLWRNGLV  120
DKSVLHKACE LSPQETPASA INAPKKLQLQ PLIHKNFINV NGGSSLNVED EDQLSNHITP  180
ASDGDNNKST PNVQHISPQD FGSKIPSRKR SRVVYLTPLK ECMEELWKLH RNYGRHAEER  240
ILEDNVNNFI PENEIAGLGA ILLKTDHDVA ASADTCESST DD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G344500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530845.10.0transcription factor stalky
TrEMBLK7LAL80.0K7LAL8_SOYBN; Uncharacterized protein
STRINGGLYMA08G45835.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3573022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.13e-17GATA transcription factor 26