PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G335900.1.p
Common NameGLYMA_08G335900, LOC100783581
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 337aa    MW: 37063.2 Da    PI: 6.5651
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G335900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-32175231158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hA+rR+Rg+gGrF
  Glyma.08G335900.1.p 175 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHAMRRARGTGGRF 231
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.9E-36173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.925174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-28176231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-24177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-24208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQSKSETANR LRSDPHSFQP GGVYSEPWWR GIGYNPMAQT MAGANASNSS SLECPNGDSE  60
SNEEGQSLSN SGMNEEDDDA TKDSKPAAPN ETGNYEQEQQ GMQHTASSPP SMREECLTQT  120
PQLELVGHSI ACSTNPYQDP YYGGMMAAYG HQQLGYAPFI GMPHARMPLP LEMAQEPVYV  180
NAKQYQGILR RRQARAKAEL ERKLIKSRKP YLHESRHQHA MRRARGTGGR FAKKTDGEGS  240
NHLGKEKDNG TDSVQSISSS GSEPLHSDSA ETWNSPNMQQ DARASKVHNS RFEAPSYQNG  300
SGSYHNHNGL QSSVYHSSSG ERVEERDCSG QQLNHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18175231258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.499750.0hypocotyl| pod| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G335900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532204.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006586181.10.0nuclear transcription factor Y subunit A-1
RefseqXP_028246203.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_028246204.10.0nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV53e-86NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0B2P2C50.0A0A0B2P2C5_GLYSO; Nuclear transcription factor Y subunit A-1
TrEMBLI1KYS90.0I1KYS9_SOYBN; Uncharacterized protein
STRINGGLYMA08G45030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Representative plantOGRP9696612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-89nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]