PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G325900.1.p
Common NameGLYMA_08G325900, LOC100805672
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 546aa    MW: 61279.3 Da    PI: 5.0928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G325900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4263.1e-1301765452374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +e L+ cA+a++ +d+e +++l+++l++++s +g+p+qRl ay++e   ar+  s+s++yk+l++se +     e l+++++++e++P++
  Glyma.08G325900.1.p 176 KEMLYMCAKAMAVNDMETTDWLVSELRKMVSISGNPIQRLGAYILESFVARIGASGSTIYKSLKCSEPT---GNELLSYMNVLYEICPYF 262
                          789*****************************************************************9...99**************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf+++ aN aI ea+ +e++vHi+Df+i+qG+QW++L+qaLa Rp gpp++Ri gv+++ s   ++  l  +g+rL+ +A++++vpfefn
  Glyma.08G325900.1.p 263 KFGYMSANGAIAEALREESEVHIVDFQIGQGTQWVSLIQALARRPVGPPKIRISGVDDSYSAyaRRGGLDIVGKRLSALAQSCHVPFEFN 352
                          **********************************************************877799999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + v   +++++le+L+++p Ea+aVn++++lh+++desv+++++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf+e+++yy a+f+
  Glyma.08G325900.1.p 353 A-VRVPVTEVQLEDLELRPYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKQLSPKVVTLVEQEFSTNNAPFLQRFVETMNYYLAVFE 441
                          *.7999************************************************************************************ PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s+++ lpre++eri+vE+++l+re+vn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k ll+ ++++ y++ee++g+l+
  Glyma.08G325900.1.p 442 SIDTVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTKAGFTPYPLSSVINSSIKDLLQSYHGH-YTLEERDGALF 530
                          ****************************************************************************77.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          lgW+++ Lv+ +aWr
  Glyma.08G325900.1.p 531 LGWMNQVLVASCAWR 545
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.701149526IPR005202Transcription factor GRAS
PfamPF035141.1E-127176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTPQNHKIS YGSGGFYVEP VQNLDSYCIP SSENIDNYSS SDNSSQTTYP SVQTLEQYCT  60
LESASTGNSF PSQNSPPALS FSSNNSLLSK LESNSYVLRP QHSLEIASGS PEDDSYLTHD  120
LDGLTHKIRE LETAMLGPNA DMLDIYGTVI PEPDSFLLEA EKWKKMMEIS CRGDLKEMLY  180
MCAKAMAVND METTDWLVSE LRKMVSISGN PIQRLGAYIL ESFVARIGAS GSTIYKSLKC  240
SEPTGNELLS YMNVLYEICP YFKFGYMSAN GAIAEALREE SEVHIVDFQI GQGTQWVSLI  300
QALARRPVGP PKIRISGVDD SYSAYARRGG LDIVGKRLSA LAQSCHVPFE FNAVRVPVTE  360
VQLEDLELRP YEAVAVNFAI SLHHVPDESV NSHNHRDRLL RLAKQLSPKV VTLVEQEFST  420
NNAPFLQRFV ETMNYYLAVF ESIDTVLPRE HKERINVEQH CLAREVVNLI ACEGEERVER  480
HELLNKWRMR FTKAGFTPYP LSSVINSSIK DLLQSYHGHY TLEERDGALF LGWMNQVLVA  540
SCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-591795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.486550.0cotyledon| leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G325900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532162.10.0scarecrow-like protein 21
RefseqXP_028246077.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A445JND70.0A0A445JND7_GLYSO; Scarecrow-like protein 5 isoform A
TrEMBLI1KYG80.0I1KYG8_SOYBN; Uncharacterized protein
STRINGGLYMA08G43780.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]