PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G325800.1.p
Common NameGLYMA_08G325800, LOC100127383
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 578aa    MW: 62390.9 Da    PI: 6.4626
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G325800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32223280260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.08G325800.1.p 223 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 280
                          8****************************************.***************85 PP
2WRKY105.72.4e-33397455159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.08G325800.1.p 397 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 455
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27216281IPR003657WRKY domain
PROSITE profilePS5081123.835217281IPR003657WRKY domain
SuperFamilySSF1182903.53E-25219281IPR003657WRKY domain
SMARTSM007744.1E-34222280IPR003657WRKY domain
PfamPF031061.7E-24223279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37382457IPR003657WRKY domain
SuperFamilySSF1182902.22E-29389457IPR003657WRKY domain
PROSITE profilePS5081138.664392457IPR003657WRKY domain
SMARTSM007743.5E-39397456IPR003657WRKY domain
PfamPF031064.4E-26398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MDAGEALSDD PNRPNSAADA APAPAGARYK LLSPAKLPIS RSPCVTISPG LSPTSFLESP  60
VLLSNMKVEP SPTTGSLSLL HQTAYGSMTS AASATFPVTT VCFNSNTVDE RKPSFFEFKP  120
HSGSNMVPAD FDNHASEKST QIDSQGKAQA FDSSALVKNE SASPSNELSL SSPVQMDCSG  180
ASARVEGDLD ELNPRSNITT GLQASQVDNR GSGLTVAAER VSDDGYNWRK YGQKHVKGSE  240
FPRSYYKCTH PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPNRRYSAG TIMSVQEDRS  300
DKASLTSRDD KGSNMCGQGS HLAEPDGKPE LLPVATNDGD LDGLGVLSNR NNDEVDDDDP  360
FSKRRKMDVG IADITPVVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY  420
YKCTNTGCPV RKHVERASHD PKAVITTYEG KHNHDVPTAR NSCHDMAGPA SASGQTRVRP  480
EESDTISLDL GMGISPAAEN TSNSQGRMML SEFGDSQIHT SNSNFKFVHT TTAPGYFGVL  540
NNNSNPYGSK ENPSDGPSLN HSAYPCPQNI GRILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36212457677Probable WRKY transcription factor 4
2lex_A1e-36212457677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.316800.0flower| hypocotyl| leaf| pod| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G325800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195740.0EU019574.1 Glycine max WRKY35 (WRKY35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530784.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028246070.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A445JNA30.0A0A445JNA3_GLYSO; Putative WRKY transcription factor 20 isoform A
TrEMBLI1KYG70.0I1KYG7_SOYBN; Uncharacterized protein
STRINGGLYMA08G43770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein