PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G325800.1.p | ||||||||
Common Name | GLYMA_08G325800, LOC100127383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 578aa MW: 62390.9 Da PI: 6.4626 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 6.9e-32 | 223 | 280 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k Glyma.08G325800.1.p 223 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 280 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.7 | 2.4e-33 | 397 | 455 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+ Glyma.08G325800.1.p 397 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 455 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-27 | 216 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.835 | 217 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-25 | 219 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-34 | 222 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 223 | 279 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-37 | 382 | 457 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-29 | 389 | 457 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 392 | 457 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-39 | 397 | 456 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-26 | 398 | 455 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MDAGEALSDD PNRPNSAADA APAPAGARYK LLSPAKLPIS RSPCVTISPG LSPTSFLESP 60 VLLSNMKVEP SPTTGSLSLL HQTAYGSMTS AASATFPVTT VCFNSNTVDE RKPSFFEFKP 120 HSGSNMVPAD FDNHASEKST QIDSQGKAQA FDSSALVKNE SASPSNELSL SSPVQMDCSG 180 ASARVEGDLD ELNPRSNITT GLQASQVDNR GSGLTVAAER VSDDGYNWRK YGQKHVKGSE 240 FPRSYYKCTH PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPNRRYSAG TIMSVQEDRS 300 DKASLTSRDD KGSNMCGQGS HLAEPDGKPE LLPVATNDGD LDGLGVLSNR NNDEVDDDDP 360 FSKRRKMDVG IADITPVVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY 420 YKCTNTGCPV RKHVERASHD PKAVITTYEG KHNHDVPTAR NSCHDMAGPA SASGQTRVRP 480 EESDTISLDL GMGISPAAEN TSNSQGRMML SEFGDSQIHT SNSNFKFVHT TTAPGYFGVL 540 NNNSNPYGSK ENPSDGPSLN HSAYPCPQNI GRILMGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 212 | 457 | 6 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 212 | 457 | 6 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31680 | 0.0 | flower| hypocotyl| leaf| pod| root| seed coat| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G325800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019574 | 0.0 | EU019574.1 Glycine max WRKY35 (WRKY35) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530784.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_028246070.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A445JNA3 | 0.0 | A0A445JNA3_GLYSO; Putative WRKY transcription factor 20 isoform A | ||||
TrEMBL | I1KYG7 | 0.0 | I1KYG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G43770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G325800.1.p |
Entrez Gene | 100127383 |