PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G320700.1.p
Common NameGLYMA_08G320700, LOC100795762
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 211aa    MW: 22951.5 Da    PI: 6.3572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G320700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-202776255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a++ a++ l+g
  Glyma.08G320700.1.p 27 RYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDTAEEAARAYDTAARTLRG 76
                         69*******.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-312686No hitNo description
SuperFamilySSF541715.62E-232786IPR016177DNA-binding domain
SMARTSM003802.5E-372790IPR001471AP2/ERF domain
PROSITE profilePS5103224.1972784IPR001471AP2/ERF domain
PfamPF008471.9E-132776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-332785IPR001471AP2/ERF domain
PRINTSPR003671.7E-112839IPR001471AP2/ERF domain
PRINTSPR003671.7E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGGTAAAA AEVAEPGLRP VYFKEQRYRG VRKRPWGRFA AEIRDPLKKA RVWLGTFDTA  60
EEAARAYDTA ARTLRGPKAK TNFPLSPPFY HPDPFSDHRH FANTGEDFHD HRRPTSSGMS  120
STVESFSGPR AAVPATAPVA TGRRYPRTPP VIPEDCRSDC DSSSSVVDDG EGDNVASSFP  180
REPLPFDLNA LPLDDADVAT DDLFCTVLCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-221584272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.69240.0cotyledon| leaf| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G320700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532144.11e-151ethylene-responsive transcription factor 3
RefseqXP_028246013.11e-151ethylene-responsive transcription factor 3-like
SwissprotO803391e-53ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLI1KYC21e-150I1KYC2_SOYBN; Uncharacterized protein
STRINGGLYMA08G43300.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-35ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]