PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G320200.1.p
Common NameGLYMA_08G320200, LOC100804246
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 487aa    MW: 53405.9 Da    PI: 6.7951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G320200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30265322258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          +Dg++WrKYGqK+ kg+++prsYYrC++   Cpv+k+v+rsaed++v+++tYeg+Hnh
  Glyma.08G320200.1.p 265 SDGCQWRKYGQKMAKGNPCPRSYYRCSMGtACPVRKQVQRSAEDQSVLITTYEGQHNH 322
                          7***************************98**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-32249324IPR003657WRKY domain
SuperFamilySSF1182908.11E-27257325IPR003657WRKY domain
PROSITE profilePS5081129.034259325IPR003657WRKY domain
SMARTSM007743.2E-36264324IPR003657WRKY domain
PfamPF031067.2E-27266322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MYKKLTSKME ATCNDISNVA VTQSSPTMSF NGKRLVVDEI DFFAEKKKKK KSEVDDQMVH  60
HQMELPNTSL DLLITNSTST SNRSNMEEEL SEAKDNTRNK FVAMLSELQE MNAENQRLRE  120
LVHNLNNKYN ALHKDLMKLT HKQHENEING AIKENDKRDD MIIPRSLLDI GIATKEDPSQ  180
QHYSERKLQE SKNIIDKLDS GKDSEKSMVD QHESPADHKA LWGWISTEAT RLSSLRDVDQ  240
ASETMSMIKK ARVSVRARTD SSMISDGCQW RKYGQKMAKG NPCPRSYYRC SMGTACPVRK  300
QVQRSAEDQS VLITTYEGQH NHVLPPTAKA MASTTSAVTS MLLSGSMLSS DGLIHPNILE  360
STAALSCSQN TAATLSASAP FPTITLDLTQ SATNNSSQLL QGAPQDNQHS LLSPVLAQKF  420
MSSATNIFDQ GTETASFVDT VNAATAAITA DPKFSAALMA AITSIIGGSH SNINGTSGDI  480
QHGNNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-24251326175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G320200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357440.0AC235744.1 Glycine max strain Williams 82 clone GM_WBb0115C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586574.20.0WRKY transcription factor 6 isoform X1
TrEMBLK7LA710.0K7LA71_SOYBN; Uncharacterized protein
STRINGGLYMA08G43258.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-75WRKY family protein