PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G317800.1.p
Common NameGLYMA_08G317800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 368aa    MW: 41619.1 Da    PI: 9.2869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G317800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-089391848
                         HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         q G g+W+++ r  g++R++k+c++rw ++l
  Glyma.08G317800.1.p  9 QNGEGNWNAVQRNTGLNRCGKSCRLRWANHL 39
                         68999**********************9986 PP
2Myb_DNA-binding51.42.5e-164588146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g++++eE++l+vd+++q+G++ W++ a+ ++ gRt +++k++w++
  Glyma.08G317800.1.p 45 KGAFSPEEEKLIVDLHAQFGNK-WARMAALLP-GRTNNEIKNYWNT 88
                         799*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-14946IPR009057Homeodomain-like
SMARTSM0071764941IPR001005SANT/Myb domain
PROSITE profilePS500906.551939IPR017877Myb-like domain
CDDcd001670.00123939No hitNo description
PfamPF002497.6E-61039IPR001005SANT/Myb domain
SuperFamilySSF466897.1E-202594IPR009057Homeodomain-like
PROSITE profilePS5129422.2034094IPR017930Myb domain
SMARTSM007174.7E-134492IPR001005SANT/Myb domain
PfamPF002492.7E-144588IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-244793IPR009057Homeodomain-like
CDDcd001676.93E-114788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLSSWIMWQN GEGNWNAVQR NTGLNRCGKS CRLRWANHLR PNLKKGAFSP EEEKLIVDLH  60
AQFGNKWARM AALLPGRTNN EIKNYWNTGI KRRQRQGLPL YSDEHDQHNR STTPTPPTTP  120
FPCLTPTGSN PDIATSFELF NQNQQQHHQQ QQQYQYQQQQ QYQQHPLSPT ASHHSPLSSP  180
LQHRQPFTSS SPHNFLDHSP LPLSSSYSPS PLSFTFQRPA PMLSTPLRFK RYCASPSYNN  240
NNNNNNLSDP PLTTQFPHLD GFRFPVSSGF SQFFQPSLLD SDRGVSSSSS SLAFQPKLEL  300
PLSQYYKPSQ EQDIKLDIEF NDPSFQSSSS GLMGDLLFEA QAMASGKNSK KRGYLSLNEG  360
NNVFNAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22119326107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G317800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625862.10.0transcription factor MYB101
RefseqXP_028213713.10.0transcription factor MYB101-like
RefseqXP_028213714.10.0transcription factor MYB101-like
RefseqXP_028213715.10.0transcription factor MYB101-like
TrEMBLK7LA520.0K7LA52_SOYBN; Uncharacterized protein
STRINGGLYMA08G43000.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-51myb domain protein 101