PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G317600.1.p
Common NameGLYMA_08G317600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 458aa    MW: 50469 Da    PI: 6.9852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G317600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-1753100148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WTt Ed +l d+v++ G g+W+++ r+ g++R++k+c++rw ++l
  Glyma.08G317600.1.p  53 KGPWTTAEDVILMDYVTKNGEGNWNAVQRKTGLNRCGKSCRLRWANHL 100
                          79******************************************9986 PP
2Myb_DNA-binding46.96.5e-15106149146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE++l+vd+++q+G++ W++ a+ ++ gRt++++k+ w++
  Glyma.08G317600.1.p 106 KGAFSPEEEKLIVDLHAQFGNK-WTRMAALLP-GRTDNEIKNCWNT 149
                          799*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.89248100IPR017930Myb domain
SuperFamilySSF466891.17E-2851147IPR009057Homeodomain-like
SMARTSM007174.5E-1252102IPR001005SANT/Myb domain
PfamPF002497.2E-1453100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2254107IPR009057Homeodomain-like
CDDcd001671.02E-855100No hitNo description
PROSITE profilePS5129422.761101155IPR017930Myb domain
SMARTSM007171.0E-14105153IPR001005SANT/Myb domain
PfamPF002493.6E-13106149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-24108154IPR009057Homeodomain-like
CDDcd001671.65E-10108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEGMANISDD ASNGENGFLA MFGGDESGGG GSGGVGSGGD QGGGNVEDVA LKKGPWTTAE  60
DVILMDYVTK NGEGNWNAVQ RKTGLNRCGK SCRLRWANHL RPNLKKGAFS PEEEKLIVDL  120
HAQFGNKWTR MAALLPGRTD NEIKNCWNTR IKRRQRQGLP LYSDEHDQHH RSTTPTPSNH  180
TFPMPHPNRI KPQHCHNSPL QHRQPFTSSS PHNFLDHSPL PLSSSSSPSP LSFTFQRSAP  240
MLSTTLRFKH YCASPSYNNL SDPPLTTQFP HLDGFRFPVS SGFSQFFQPS LLDSDRGVSS  300
SSSSLAFQPK LELPLSQYYK PPEEQDIKLD IEFNDPSFQS SSSGLMGDLL FEAQAMALGK  360
NSKKRGYLKP KPKEEAPDFS KFMNEDLSSL LTVISSSNMQ GHECHNNSAR EVSNVQSSGS  420
GMTDDNFGLD IKPIASLFPL SNTRNHDENQ GCYSWDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28511545107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G317600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625862.10.0transcription factor MYB101
TrEMBLK7LA480.0K7LA48_SOYBN; Uncharacterized protein
STRINGGLYMA08G42955.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.16e-67myb domain protein 97