PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G317300.1.p
Common NameGLYMA_08G317300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 462aa    MW: 50995.3 Da    PI: 6.1103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G317300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-1753100148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WTt Ed +l d+v++ G g+W+++ r  g++R++k+c++rw ++l
  Glyma.08G317300.1.p  53 KGPWTTAEDVILMDYVTKNGEGNWNAVQRNTGLNRCGKSCRHRWANHL 100
                          79******************************************9986 PP
2Myb_DNA-binding53.45.8e-17106149146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE++l+vd+++q+G++ W++ a+ ++ gRt++++k++w++
  Glyma.08G317300.1.p 106 KGAFSPEEEKLIVDLHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 149
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-2246103IPR009057Homeodomain-like
PROSITE profilePS5129415.98248100IPR017930Myb domain
SuperFamilySSF466891.91E-2951147IPR009057Homeodomain-like
SMARTSM007173.2E-1252102IPR001005SANT/Myb domain
PfamPF002493.0E-1453100IPR001005SANT/Myb domain
CDDcd001677.20E-955100No hitNo description
PROSITE profilePS5129424.545101155IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-25104154IPR009057Homeodomain-like
SMARTSM007171.1E-15105153IPR001005SANT/Myb domain
PfamPF002494.1E-15106149IPR001005SANT/Myb domain
CDDcd001671.25E-11108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEGMANISDD ASNGENGFLA MFGGDESGGG GSGGVGSSGD QGGGNVEDVA LKKGPWTTAE  60
DVILMDYVTK NGEGNWNAVQ RNTGLNRCGK SCRHRWANHL RPNLKKGAFS PEEEKLIVDL  120
HAQFGNKWAR MAALLPGRTD NEIKNYWNTR IKRRQRQGSN PNIATSFELF NQNQQHHQQQ  180
QYQYQQQQYQ QHPLSPTASH HSLLSSPLQH RQPFTSSSPH NFLDHSPLPL SSSSSPSPLS  240
FTFQRPAPML STPLRFKRYC ASPSYNNNLS DPPLTTQFPH LDGLRFPVSS GFSQFFQPSL  300
LDSDRGVSSS SSSLAFQPKL ELPLSQYYKP PEEQDIKLDI EFNDPSFQSS SSGLMGDLLF  360
EAQAMASEPK PKEEAPDFSK FMNGDLSSLL TVIPSSNMQG HEWHNNSARE MSNVQSSVSG  420
MTDDNFGLDI KPIASLFPLS NTTNHDENQG CYSWDNLPGL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30511545107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G317300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625862.10.0transcription factor MYB101
TrEMBLA0A0R0J5L00.0A0A0R0J5L0_SOYBN; Uncharacterized protein
STRINGGLYMA08G42920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.19e-61myb domain protein 101