PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G307100.1.p
Common NameGLYMA_08G307100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 305aa    MW: 35439.3 Da    PI: 8.4383
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G307100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.3e-50191462128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeelv +yL++kv++k+l++ e ik+vdiyk++PwdLpk  + +ekewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk+
  Glyma.08G307100.1.p  19 LPGFRFHPTDEELVGFYLQRKVDKKPLKI-ELIKQVDIYKYDPWDLPKVNSFGEKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKS 107
                          69***************************.89***************66566999*********************************** PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++    +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Glyma.08G307100.1.p 108 IYCVkePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                          **97445566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5514170IPR003441NAC domain
PROSITE profilePS5100553.33718171IPR003441NAC domain
PfamPF023653.0E-2520146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNAKVHSSDD TKKDEEVVLP GFRFHPTDEE LVGFYLQRKV DKKPLKIELI KQVDIYKYDP  60
WDLPKVNSFG EKEWYFFCIR GRKYRNSVRP NRVTRSGFWK ATGIDKSIYC VKEPHECIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KSNPNDLQEA EVWTLCRIFK RIPSFKKYTP  180
NLKDSTPVTK PNPVNSDTST LNSDNCEPYL ICRDPMVMQQ IERKPVIGQV DEKKHMFLGQ  240
FGPLPHHLQA PSTTPYPNFW DQNNVEDYTF ANENWDDLRS VVQFAIDPST VFDCTGTYIP  300
PYFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482017719171NO APICAL MERISTEM PROTEIN
1ut4_B2e-482017719171NO APICAL MERISTEM PROTEIN
1ut7_A2e-482017719171NO APICAL MERISTEM PROTEIN
1ut7_B2e-482017719171NO APICAL MERISTEM PROTEIN
3swm_A2e-482017722174NAC domain-containing protein 19
3swm_B2e-482017722174NAC domain-containing protein 19
3swm_C2e-482017722174NAC domain-containing protein 19
3swm_D2e-482017722174NAC domain-containing protein 19
3swp_A2e-482017722174NAC domain-containing protein 19
3swp_B2e-482017722174NAC domain-containing protein 19
3swp_C2e-482017722174NAC domain-containing protein 19
3swp_D2e-482017722174NAC domain-containing protein 19
4dul_A2e-482017719171NAC domain-containing protein 19
4dul_B2e-482017719171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.382250.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G307100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938380.0BT093838.1 Soybean clone JCVI-FLGm-14E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247000.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-88NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0R0IV110.0A0A0R0IV11_SOYBN; Uncharacterized protein
STRINGGLYMA08G41995.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-90NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]