PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G303900.2.p
Common NameGLYMA_08G303900, LOC100800166
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 526aa    MW: 57805.8 Da    PI: 6.8769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G303900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17331377455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Glyma.08G303900.2.p 331 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 377
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-19324384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-20325388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-15330375No hitNo description
PfamPF000104.7E-15331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-18333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MNNSVPDWNF GSDSCVTSTN QKKPMMGVDQ ELVELLWQNG QVVHSQTHRK PVVNSSNLIQ  60
DDETVSWIQY PLEDPLEQEF CSNLLSELAP CEVESYKQIK PFEEGKFTKL DASSAPHVTV  120
SSQLPTMKSS SFQDFSGIPI PAPRFHVSDS PQKNNNHLGG SCKVQNFSHF SAPLNVSSAS  180
ANVHFGDKIT GNMSRNEIRE CSLMTVGSSY CGSNHIPQDP DASRASSNGV WTTTLSVEPE  240
AVRDDVPKTI PQKEKGKSEM LEPAVTSSSG GSGSSLGKTC SLSTRNQGQK RKGIDVEESE  300
EQSEDTELKS ALGNKSSQRT GSARRNRAAE VHNLSERRRR DRINEKMKAL QQLIPHSSKT  360
DKASMLEEAI EYLKSLQLQL QLMWMGSGMA PIMFPGIQHY MSQMGMGMAR PPFPPPIHNP  420
MQLPRVPLDK SVSASQTPNQ TLMCQNPILG AFNYQNQMQN PALSEQYVRY MGYHLMQNAS  480
QPMNVFRYGP QGVQHSQTMI TPSSNSSGNM SGAANIDEAV SGKMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335340ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.134440.0cotyledon| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G303900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352430.0AC235243.1 Glycine max strain Williams 82 clone GM_WBb0032L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532070.20.0transcription factor PIF4 isoform X1
RefseqXP_006586042.10.0transcription factor PIF4 isoform X1
RefseqXP_028245818.10.0transcription factor PIF4-like isoform X1
TrEMBLA0A445JM890.0A0A445JM89_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform B
TrEMBLI1KXW50.0I1KXW5_SOYBN; Uncharacterized protein
STRINGGLYMA08G41620.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.29e-46phytochrome interacting factor 4