PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G301700.8.p

Common Name

GLYMA_08G301700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HB-other

Protein Properties

Length: 468aa MW: 52468.7 Da PI: 6.4643

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G301700.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	5	60	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ ql++Le++++ n+yp++e++ eLA++l+Lte+q++ WF+ rR k+kk Glyma.08G301700.8.p 5 KKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKK 60 89****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.265	1	61	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-17	3	68	IPR009057	Homeodomain-like
SMART	SM00389	9.8E-20	3	65	IPR001356	Homeobox domain
CDD	cd00086	1.24E-17	5	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-19	5	60	IPR009057	Homeodomain-like
Pfam	PF00046	5.3E-17	5	60	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MEKNKKRRLK TPAQLKALED FYNDNKYPTE EMKSELADEL ELTEKQISGW FCHRRLKDKK 60 MLNDEVCANG RQDRSSGVIQ DRGSGLVQDS CGSTKHVHYR YLDPKEVESH GLYNHGFSAA 120 DITYGHKNHR YAENDSATDN TSSESSSSLQ DRLLCQGQDP YDMEPSSHVT PNGSLLPPNT 180 KGANNMGHKP SGYLKVKGEI EHAAITAVKK QLGKHYREDG PLLSVEFDTI PPEAFECQIA 240 DLANEAYYAA NPALPNSPEV SAVKKQSSLS SRYDSYFTKI SSQDSQMVRD STGEASAYNN 300 TKNCRKGTKH GFDGTRYDSG SNPSDHYEEN NLVVNQTDSL LHGYENSNLK NVQRGEYVKS 360 KPSNSVHKSQ VYLDTGERRG LNKRMAKEEK FDGDRKIKKQ YRDPDEVRVL TNEMTVAKWA 420 KVDPLEQYDV KQSSVAELEP RKSQRSAAEM PSSFSEDETA ETSSSAD*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MEKNKKRRLK TPAQLKALED FYNDNKYPTE EMKSELADEL ELTEKQISGW FCHRRLKDKK  60
MLNDEVCANG RQDRSSGVIQ DRGSGLVQDS CGSTKHVHYR YLDPKEVESH GLYNHGFSAA  120
DITYGHKNHR YAENDSATDN TSSESSSSLQ DRLLCQGQDP YDMEPSSHVT PNGSLLPPNT  180
KGANNMGHKP SGYLKVKGEI EHAAITAVKK QLGKHYREDG PLLSVEFDTI PPEAFECQIA  240
DLANEAYYAA NPALPNSPEV SAVKKQSSLS SRYDSYFTKI SSQDSQMVRD STGEASAYNN  300
TKNCRKGTKH GFDGTRYDSG SNPSDHYEEN NLVVNQTDSL LHGYENSNLK NVQRGEYVKS  360
KPSNSVHKSQ VYLDTGERRG LNKRMAKEEK FDGDRKIKKQ YRDPDEVRVL TNEMTVAKWA  420
KVDPLEQYDV KQSSVAELEP RKSQRSAAEM PSSFSEDETA ETSSSAD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	9	KKRRLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36364	0.0	cotyledon\| flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G301700.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025985549.1	0.0	uncharacterized protein LOC100811885 isoform X4
TrEMBL	A0A0R0J0F9	0.0	A0A0R0J0F9_SOYBN; Uncharacterized protein
STRING	GLYMA08G41330.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	8e-69	HB-other family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G301700.8.p