PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G301700.5.p
Common NameGLYMA_08G301700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 527aa    MW: 59363.1 Da    PI: 6.3024
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G301700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-192075257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR+  t+ ql++Le++++ n+yp++e++ eLA++l+Lte+q++ WF+ rR k+kk
  Glyma.08G301700.5.p 20 KKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKK 75
                         89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20475IPR009057Homeodomain-like
SuperFamilySSF466891.24E-171679IPR009057Homeodomain-like
PROSITE profilePS5007117.2651676IPR001356Homeobox domain
SMARTSM003899.8E-201880IPR001356Homeobox domain
PfamPF000466.3E-172075IPR001356Homeobox domain
CDDcd000862.43E-172076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEEVTELQSE ENKLSMEKNK KRRLKTPAQL KALEDFYNDN KYPTEEMKSE LADELELTEK  60
QISGWFCHRR LKDKKMLNDE VCANGRQDRS SGVIQDRGSG LVQDSCGSTK HVHYRYLDPK  120
EVESHGLYNH GFSAADITYG HKNHRYAEND SATDNTSSES SSSLQDRLLC QGQDPYDMEP  180
SSHVTPNGSL LPPNTKGANN MGHKPSGYLK VKGEIEHAAI TAVKKQLGKH YREDGPLLSV  240
EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS YFTKISSQDS  300
QMVRGDFGSL HDSDFQYKKS HHDINQRRNF QSFTNPLPHK NSCLDFNADS TGEASAYNNT  360
KNCRKGTKHG FDGTRYDSGS NPSDHYEENN LVVNQTDSLL HGYENSNLKN VQRGEYVKSK  420
PSNSVHKSQV YLDTGERRGL NKRMAKEEKF DGDRKIKKQY RDPDEVRVLT NEMTVAKWAK  480
VDPLEQYDVK QSSVAELEPR KSQRSAAEMP SSFSEDETAE TSSSAD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.363640.0cotyledon| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G301700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025985547.10.0uncharacterized protein LOC100811885 isoform X2
TrEMBLI1KXU50.0I1KXU5_SOYBN; Uncharacterized protein
STRINGGLYMA08G41330.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.15e-73HB-other family protein