PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G301700.4.p

Common Name

GLYMA_08G301700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HB-other

Protein Properties

Length: 483aa MW: 54216.6 Da PI: 6.0231

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G301700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ ql++Le++++ n+yp++e++ eLA++l+Lte+q++ WF+ rR k+kk Glyma.08G301700.4.p 20 KKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKK 75 89****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-20	4	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-17	16	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	16	76	IPR001356	Homeobox domain
SMART	SM00389	9.8E-20	18	80	IPR001356	Homeobox domain
Pfam	PF00046	5.6E-17	20	75	IPR001356	Homeobox domain
CDD	cd00086	1.74E-17	20	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MEEVTELQSE ENKLSMEKNK KRRLKTPAQL KALEDFYNDN KYPTEEMKSE LADELELTEK 60 QISGWFCHRR LKDKKMLNDE VCANGRQDRS SGVIQDRGSG LVQDSCGSTK HVHYRYLDPK 120 EVESHGLYNH GFSAADITYG HKNHRYAEND SATDNTSSES SSSLQDRLLC QGQDPYDMEP 180 SSHVTPNGSL LPPNTKGANN MGHKPSGYLK VKGEIEHAAI TAVKKQLGKH YREDGPLLSV 240 EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS YFTKISSQDS 300 QMVRDSTGEA SAYNNTKNCR KGTKHGFDGT RYDSGSNPSD HYEENNLVVN QTDSLLHGYE 360 NSNLKNVQRG EYVKSKPSNS VHKSQVYLDT GERRGLNKRM AKEEKFDGDR KIKKQYRDPD 420 EVRVLTNEMT VAKWAKVDPL EQYDVKQSSV AELEPRKSQR SAAEMPSSFS EDETAETSSS 480 AD*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MEEVTELQSE ENKLSMEKNK KRRLKTPAQL KALEDFYNDN KYPTEEMKSE LADELELTEK  60
QISGWFCHRR LKDKKMLNDE VCANGRQDRS SGVIQDRGSG LVQDSCGSTK HVHYRYLDPK  120
EVESHGLYNH GFSAADITYG HKNHRYAEND SATDNTSSES SSSLQDRLLC QGQDPYDMEP  180
SSHVTPNGSL LPPNTKGANN MGHKPSGYLK VKGEIEHAAI TAVKKQLGKH YREDGPLLSV  240
EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS YFTKISSQDS  300
QMVRDSTGEA SAYNNTKNCR KGTKHGFDGT RYDSGSNPSD HYEENNLVVN QTDSLLHGYE  360
NSNLKNVQRG EYVKSKPSNS VHKSQVYLDT GERRGLNKRM AKEEKFDGDR KIKKQYRDPD  420
EVRVLTNEMT VAKWAKVDPL EQYDVKQSSV AELEPRKSQR SAAEMPSSFS EDETAETSSS  480
AD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	KKRRLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36364	0.0	cotyledon\| flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G301700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025985549.1	0.0	uncharacterized protein LOC100811885 isoform X4
TrEMBL	A0A0R0J0F9	0.0	A0A0R0J0F9_SOYBN; Uncharacterized protein
STRING	GLYMA08G41330.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-70	HB-other family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G301700.4.p