PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G301100.1.p
Common NameGLYMA_08G301100, LOC100810284
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 414aa    MW: 46714 Da    PI: 8.5421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-52151421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Glyma.08G301100.1.p  15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 103
                          579***************************.89***************9888999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Glyma.08G301100.1.p 104 PIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142
                          ****956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-5814174IPR003441NAC domain
PROSITE profilePS5100557.0115174IPR003441NAC domain
PfamPF023651.8E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEERNDNGEK LDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL  60
PKMATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLTHPPS SLKKFMDKTI PANESWAICR IFKKTNATAQ  180
RALSHSWVSP LPETTTTNSD HMITTDHRDI NQFCQANMPF TKKTSLASQF CTFNHNDTQH  240
SSTTTSTTPC PLDVVASYNK PLMNPLMLYK SLDRLPFSNY GDLLTSGLIF SSPLETSTTT  300
NAKSSMDASS LLLSTSSSVL GEFSKNSEGI ITTNFGVLQE HGNDYQIPLL RDNMQGTFGN  360
HDDNNVLVKI PNVNVVPRVG DQQLETVRSI GFPFNIGDAW KPNMLWDASS LSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-531718119171NO APICAL MERISTEM PROTEIN
1ut4_B4e-531718119171NO APICAL MERISTEM PROTEIN
1ut7_A4e-531718119171NO APICAL MERISTEM PROTEIN
1ut7_B4e-531718119171NO APICAL MERISTEM PROTEIN
3swm_A4e-531718122174NAC domain-containing protein 19
3swm_B4e-531718122174NAC domain-containing protein 19
3swm_C4e-531718122174NAC domain-containing protein 19
3swm_D4e-531718122174NAC domain-containing protein 19
3swp_A4e-531718122174NAC domain-containing protein 19
3swp_B4e-531718122174NAC domain-containing protein 19
3swp_C4e-531718122174NAC domain-containing protein 19
3swp_D4e-531718122174NAC domain-containing protein 19
4dul_A4e-531718119171NAC domain-containing protein 19
4dul_B4e-531718119171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G301100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530701.10.0protein FEZ
RefseqXP_028245792.10.0protein FEZ-like
SwissprotQ9ZVH01e-112FEZ_ARATH; Protein FEZ
TrEMBLA0A0B2PGY50.0A0A0B2PGY5_GLYSO; Protein FEZ
TrEMBLK7L9U30.0K7L9U3_SOYBN; Uncharacterized protein
STRINGGLYMA08G41260.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-111NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]